| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013668m |
| Family | GH28 |
| Protein Properties | Length: 458 Molecular Weight: 49203.3 Isoelectric Point: 6.4568 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2172805 End: 2175017 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 86 | 431 | 0 |
| KGGAQLYVPPGRWLTGSFSLTNHLTLFLEDGALIVASQDPSHWEVVDPLPSYGPGIDFPGKRYKSLINGNMLHDVVVTGDNGTIDGQGLVWWDRLTSHSL KYNRPHLIEFISSENVIVSNLTFLNAPAYTFHSIYSSHVYIHKIVAHASPESLYTIGIVPDSSDNVCIQNSTINVGYDAISLKSGWDEYGLAYSRPTENV HIRNVYLRGASGSSISFGSEMSGGISGIVVDNAFLHNSLTGIAFRTTKGRGGYIKDIDISNIDMSTIGTAIVANGSFGSHPDDKYDASALPLVSHIRLNN ISGENIGVAGILFGIKESPFSSVALSNVSLLMNSGSTVSWQCSYVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 458 Download |
| STLHHCFRSG STRVAIILIL ALTSLTPNYA KDHGAGKVCD ELGRRSLSTR PHSVSITDFG 60 AVGDGKTLNT IAFQNAVFYL MSFADKGGAQ LYVPPGRWLT GSFSLTNHLT LFLEDGALIV 120 ASQDPSHWEV VDPLPSYGPG IDFPGKRYKS LINGNMLHDV VVTGDNGTID GQGLVWWDRL 180 TSHSLKYNRP HLIEFISSEN VIVSNLTFLN APAYTFHSIY SSHVYIHKIV AHASPESLYT 240 IGIVPDSSDN VCIQNSTINV GYDAISLKSG WDEYGLAYSR PTENVHIRNV YLRGASGSSI 300 SFGSEMSGGI SGIVVDNAFL HNSLTGIAFR TTKGRGGYIK DIDISNIDMS TIGTAIVANG 360 SFGSHPDDKY DASALPLVSH IRLNNISGEN IGVAGILFGI KESPFSSVAL SNVSLLMNSG 420 STVSWQCSYV YGSSNLVTPE PCPELKRDDE AYGRAAV* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 7.0e-18 | 49 | 448 | 413 | + Probable polygalacturonase At3g15720 |
| PLN02793 | PLN02793 | 8.0e-19 | 44 | 442 | 424 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 4.0e-19 | 159 | 430 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 4.0e-20 | 44 | 415 | 391 | + polygalacturonase ADPG |
| COG5434 | PGU1 | 5.0e-38 | 54 | 366 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 81 | 457 | 1 | 377 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 31 | 455 | 20 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 81 | 457 | 1 | 377 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 31 | 455 | 22 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 14 | 457 | 3 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8e-26 | 52 | 387 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8e-26 | 52 | 387 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8e-26 | 52 | 387 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8e-26 | 52 | 387 | 26 | 382 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 9e-19 | 98 | 430 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
