Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013685m |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 48760.1 Isoelectric Point: 5.2268 |
Chromosome | Chromosome/Scaffold: 3 Start: 5459600 End: 5461806 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 378 | 0 |
WEAICSGTGDGQLVVPAGMTFMLQPLRFQGSCKSAPIFVQILGNLVASSKGNWKGDKDQWIMFADIEGLVVEGDGEIHGQGSSWWEHKGSRPTALKFKSC NNLRLSGLTHLDSPMAHIHINDCNYVTISSLRINAPESSPNTDGIDIGASSNVVIQDCVIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGET ATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFHGITLDNVENPIIIDQLYNGGDSDKAKDHKSSAVEVSKVVYSNFIGTSKSEYGVDFRCSETVP CTEIFLRDVKIETASSGSGQVAQGQCLNVRG |
Full Sequence |
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Protein Sequence Length: 454 Download |
MKKKNTWFLN FSLFILQIFT SSNALDVTQF GAVGDGVTDD SQAFLKAWEA ICSGTGDGQL 60 VVPAGMTFML QPLRFQGSCK SAPIFVQILG NLVASSKGNW KGDKDQWIMF ADIEGLVVEG 120 DGEIHGQGSS WWEHKGSRPT ALKFKSCNNL RLSGLTHLDS PMAHIHINDC NYVTISSLRI 180 NAPESSPNTD GIDIGASSNV VIQDCVIATG DDCIAINSGT SNIHISGIDC GPGHGISIGS 240 LGKDGETATV ENVCVQNCNF RGTMNGARIK TWQGGSGYAR MITFHGITLD NVENPIIIDQ 300 LYNGGDSDKA KDHKSSAVEV SKVVYSNFIG TSKSEYGVDF RCSETVPCTE IFLRDVKIET 360 ASSGSGQVAQ GQCLNVRGVS TLAVPGLECL SLTTDMLSSP QLPEQTCMLA QSGQPRTQPM 420 QDPIWDYESR GKRLVVSNAI LISFVSLVTY IFR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-90 | 52 | 376 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-95 | 3 | 359 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-101 | 21 | 397 | 388 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 8.0e-122 | 8 | 381 | 377 | + polygalacturonase | ||
PLN03003 | PLN03003 | 0 | 3 | 452 | 453 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC75354.1 | 0 | 23 | 390 | 21 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_001078162.1 | 0 | 4 | 452 | 2 | 450 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 3 | 452 | 2 | 454 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 11 | 393 | 6 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 25 | 391 | 28 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 58 | 302 | 55 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-25 | 40 | 305 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-25 | 40 | 305 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-25 | 40 | 305 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-25 | 40 | 305 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |