Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10013686m |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 48499.7 Isoelectric Point: 5.7099 |
Chromosome | Chromosome/Scaffold: 3 Start: 5862042 End: 5865003 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 72 | 414 | 0 |
KGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDIVSPLPSYGRGIELPGKRYRSLINGDNLLDVIITGDNGTFDGQGAAWWEWLESGSL NYSRPHIIEFVSSKNILISNLTFLNAPSTNIHPVYCSQVHIRKVLIETSVDSPYVLGVSPDSSDNVCIEESTINVGHDAVSLKSGWDQYGINYGRPTTAV HIRNLSLKSPTGAGISFGSEMSGGISDITVERINIHSSLVGIAFRTTRGRGGYIRDITISNIDLSSVDTAIFASGHTGSHPDDKYDRDALPVVTRITMRN ITGEDIGVAGNLTGIGESPFTSICLADIHLQTHSDSWVCSNVS |
Full Sequence |
---|
Protein Sequence Length: 452 Download |
MKMPVALVWL LAFIILLIRG EGNNAICKKS FKLDPRPHSV SILEFGAVGD GKTLNTLAFQ 60 NAIFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE KGATILASPD PSHWDIVSPL 120 PSYGRGIELP GKRYRSLING DNLLDVIITG DNGTFDGQGA AWWEWLESGS LNYSRPHIIE 180 FVSSKNILIS NLTFLNAPST NIHPVYCSQV HIRKVLIETS VDSPYVLGVS PDSSDNVCIE 240 ESTINVGHDA VSLKSGWDQY GINYGRPTTA VHIRNLSLKS PTGAGISFGS EMSGGISDIT 300 VERINIHSSL VGIAFRTTRG RGGYIRDITI SNIDLSSVDT AIFASGHTGS HPDDKYDRDA 360 LPVVTRITMR NITGEDIGVA GNLTGIGESP FTSICLADIH LQTHSDSWVC SNVSGFSDDV 420 SPEPCSELMS SPSSCFAGGS IYGGEAAAQS W* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-15 | 36 | 425 | 425 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-19 | 138 | 413 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-22 | 37 | 342 | 317 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-24 | 38 | 422 | 398 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 2.0e-48 | 40 | 365 | 354 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM62920.1 | 0 | 3 | 451 | 1 | 450 | polygalacturonase, putative [Arabidopsis thaliana] |
DDBJ | BAA95779.1 | 0 | 3 | 451 | 1 | 450 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_188308.1 | 0 | 1 | 451 | 1 | 452 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273305.1 | 0 | 20 | 425 | 21 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 434 | 13 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-16 | 84 | 414 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |