y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013715m |
Family | PL1 |
Protein Properties | Length: 443 Molecular Weight: 48986.5 Isoelectric Point: 8.8153 |
Chromosome | Chromosome/Scaffold: 3 Start: 9309889 End: 9313570 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 156 | 361 | 0 |
IQDRPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVAIAGGACITIQFVTNIIIHGINIHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWID HNSLSNCADGLVDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 443 Download |
MVVFNNRSFL ALFATLLILA LSVNASTIAN ETEELNSHSL SNTSSTVDKL PNDDGAWNEH 60 AVKNPDEVAA MVDMTIKNST ERRRLGFFSC ATGNPIDDCW RCDRNWHLRR KRLANCAIGF 120 GRNAVGGRDG RYYVVTDPSD HDAVNPRPGT LRHAVIQDRP LWIVFKRDMV ITLSQELIMN 180 SFKTIDGRGV NVAIAGGACI TIQFVTNIII HGINIHDCRR TGNAMVRSSP SHYGWRTMAD 240 GDAISIFGSS HIWIDHNSLS NCADGLVDAI MGSTAITISN NYMTHHNEVM LMGHSDSYTR 300 DKMMQVTIAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWV MYAIGGSANP TINSQGNRFL 360 APGNPFAKEV TKRVGSWQGE WKQWNWRSQG DQMLNGAYFT RSGAAAPASY ARASSLGAKP 420 ASVVSMLTYS SGALKCRIGM RC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 181 | 359 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-67 | 175 | 359 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-79 | 168 | 363 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 16 | 442 | 16 | 437 | ripening-related pectate lyase [Mangifera indica] |
DDBJ | BAB01216.1 | 0 | 1 | 438 | 1 | 436 | pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_187357.1 | 0 | 10 | 442 | 6 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_189110.1 | 0 | 1 | 442 | 1 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | Q9SVQ6 | 0 | 54 | 442 | 29 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 94 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 94 | 434 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 163 | 368 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000006 | 184 | 359 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000002 | 184 | 371 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |