| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013751m |
| Family | GH5 |
| Protein Properties | Length: 434 Molecular Weight: 49755.5 Isoelectric Point: 7.1019 |
| Chromosome | Chromosome/Scaffold: 3 Start: 14903353 End: 14906250 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 53 | 379 | 1.9e-33 |
| DGKPLYVNGWNSYWFMDHAVNDHSRHRVGAMLEAGAKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQAYGGKT QYVNWAWQEGVGLSSSNDSFFFDPSIRRYFKNYLTVLLTRKNSLTGIEYRNDPTIFAWELINEPRCMSDISGDTLQDWINEMTAFIKSIDNKHLLTVGLE GFYGPKSPKRLTVNPERWASELGSDFVRNSDSPNIDFASVHIYPDHWFHDLGFEDKLKFVVKWILSHIEDGDKELKKPVLFTEFGLSNLNKDYDPSQRDR FYRTIFDIIYKSAKRRRSGAGTLMWQF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 434 Download |
| MAPTGNGPLI PILGFLTCVA FIYLSFGDLW FDFKREADLG GFVKRNGTQF VVDGKPLYVN 60 GWNSYWFMDH AVNDHSRHRV GAMLEAGAKM GLTVCRTWAF NDGGYNALQI SPGRFDERVF 120 KALDHVIAEA KTHGVRLLLS LVNNLQAYGG KTQYVNWAWQ EGVGLSSSND SFFFDPSIRR 180 YFKNYLTVLL TRKNSLTGIE YRNDPTIFAW ELINEPRCMS DISGDTLQDW INEMTAFIKS 240 IDNKHLLTVG LEGFYGPKSP KRLTVNPERW ASELGSDFVR NSDSPNIDFA SVHIYPDHWF 300 HDLGFEDKLK FVVKWILSHI EDGDKELKKP VLFTEFGLSN LNKDYDPSQR DRFYRTIFDI 360 IYKSAKRRRS GAGTLMWQFL IEGMEGFNDD FGIVPWEQDS IQRLMIEQSC RLGRITGRHL 420 QDKKSIEICS QRP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3934 | COG3934 | 0.009 | 182 | 385 | 230 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| pfam12876 | Cellulase-like | 0.001 | 200 | 295 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 1.0e-7 | 203 | 349 | 148 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 2.0e-23 | 82 | 379 | 298 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD20927.1 | 0 | 2 | 433 | 3 | 403 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
| GenBank | ABK95966.1 | 0 | 4 | 432 | 6 | 434 | unknown [Populus trichocarpa] |
| RefSeq | NP_179660.2 | 0 | 2 | 433 | 3 | 433 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_194561.1 | 0 | 1 | 432 | 1 | 430 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330687.1 | 0 | 4 | 432 | 6 | 434 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 42 | 416 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 41 | 395 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 41 | 395 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 41 | 395 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 41 | 395 | 13 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
