| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10013802m |
| Family | PL1 |
| Protein Properties | Length: 419 Molecular Weight: 46488.6 Isoelectric Point: 8.808 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2245295 End: 2249797 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 132 | 337 | 0 |
| IQEEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHIHDCKPTGNAMVRSSPTHYGWRSMADGDAISIFGASHIWID HNSLSNCADGLVDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQ GNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MAAVRKLTLL FASALLLATL FIGVSSSRSN ETWHEHAVEK PEEVAAMVDM SIRNSTERRR 60 LGYFSCATGN PIDDCWRCDR KWQLRRKRLA DCSIGFGRNA IGGRDGRYYV VTDPGDDNPV 120 NPVPGTLRHA VIQEEPLWII FKRDMVITLK QELIMNSFKT IDGRGVNVHI ANGACLTIQY 180 VTNIIVHGIH IHDCKPTGNA MVRSSPTHYG WRSMADGDAI SIFGASHIWI DHNSLSNCAD 240 GLVDAVMSST AITVSNNFFT HHNEVMLLGH SDSYTRDKVM QVTIAYNHFG EGLIQRMPRC 300 RHGYFHVVNN DYTHWEMYAI GGSASPTINS QGNRFLAPTN PFAKEVTKRE YTGQSTWKHW 360 NWRSEGDLFL NGAFFTRSGA GAGANYARAS SLSAKSSSLV GTMTSYSGAL NCRAGRRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 157 | 341 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-71 | 150 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-81 | 144 | 338 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61584.1 | 0 | 3 | 418 | 2 | 416 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM63307.1 | 0 | 3 | 418 | 2 | 417 | pectate lyase [Arabidopsis thaliana] |
| GenBank | AAX88800.1 | 0 | 14 | 418 | 13 | 437 | ripening-related pectate lyase [Mangifera indica] |
| RefSeq | NP_187357.1 | 0 | 3 | 418 | 2 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568705.1 | 0 | 3 | 418 | 2 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-18 | 139 | 337 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 8e-16 | 160 | 335 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pe9_B | 0.000000000001 | 160 | 335 | 90 | 287 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
