| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10015075m |
| Family | GH3 |
| Protein Properties | Length: 763 Molecular Weight: 83454.8 Isoelectric Point: 8.6239 |
| Chromosome | Chromosome/Scaffold: 3 Start: 6987358 End: 6990164 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 74 | 324 | 0 |
| GVPRLGVPPYEWWSEALHGVSNVGPGVRFNGTVPGATSFPATILTAASFNTSLWLKMGEVVSTEARAMHNVGLAGLTYWSPNVNIFRDPRWGRGQETPGE DPLVVSKYAVNYVKGLQDVHEAGKSRRLKVSSCCKHYTAYDLDNWKGIDRFHFDAKVTNQDLEDTYQPPFKSCVEEGDVSSVMCSYNRVNGIPTCADPNL LRGVIRGKWRLDGYIVSDCDSIQVYFDDIHYTKTREDAVAIALKAGLNMNC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 763 Download |
| MRVSRFVNLS LLLAALVSSL CESQKNFACD KNAPATAKYG FCNVSLSYEA RAKDLVLRLS 60 LNEKVQQLVN KATGVPRLGV PPYEWWSEAL HGVSNVGPGV RFNGTVPGAT SFPATILTAA 120 SFNTSLWLKM GEVVSTEARA MHNVGLAGLT YWSPNVNIFR DPRWGRGQET PGEDPLVVSK 180 YAVNYVKGLQ DVHEAGKSRR LKVSSCCKHY TAYDLDNWKG IDRFHFDAKV TNQDLEDTYQ 240 PPFKSCVEEG DVSSVMCSYN RVNGIPTCAD PNLLRGVIRG KWRLDGYIVS DCDSIQVYFD 300 DIHYTKTRED AVAIALKAGL NMNCGDFLGK YTENAVKLKK LNGSEVDEAL IYNYIVLMRL 360 GFFDGDPKSL PFGHLGPSDV CSKDHQMLAL EAAKQGIVLL ENRGDLPLSK NEVKKLAVIG 420 PNANATKVMI SNYAGLPCKY TSPLQGLQKY VPEKVVYEPG CKDVKCGDQT LISAAVKAVS 480 EADVTVLVVG LDQTLVRDVA NAAKKTVILV IMSAGPIDIS FAKNLSKICA VLWVGYPGEA 540 GGDAIAQVIF GDYNPSGRLP ETWYPQEYAN KVAMTDMNMR PNSTSGFPGR SYRFYTGKPI 600 YKFGYGLSYS SFSTFVLSAP SIIHIKTNPI LNLNKTTSVD ISTVNCHDLK IRIDVGVKNH 660 GLRSGSHVVL VFWKPPKCSK SLVGGGVPQK QLVGFERVEV ETSMTEKVTI EFDVCKGLSL 720 VDTHGKRKLV TGHHTLVIGS KSDQQIYHHL NVRLAGDSTV SI* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam01915 | Glyco_hydro_3_C | 1.0e-55 | 397 | 610 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. |
| COG1472 | BglX | 3.0e-56 | 37 | 447 | 427 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
| pfam00933 | Glyco_hydro_3 | 3.0e-60 | 69 | 349 | 285 | + Glycosyl hydrolase family 3 N terminal domain. |
| PRK15098 | PRK15098 | 2.0e-74 | 110 | 714 | 681 | + beta-D-glucoside glucohydrolase; Provisional |
| PLN03080 | PLN03080 | 0 | 23 | 739 | 754 | + Probable beta-xylosidase; Provisional |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB02547.1 | 0 | 1 | 759 | 1 | 778 | beta-1,4-xylosidase [Arabidopsis thaliana] |
| EMBL | CAN82161.1 | 0 | 1 | 755 | 1 | 787 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_188596.1 | 0 | 1 | 762 | 1 | 781 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002264114.1 | 0 | 1 | 755 | 25 | 811 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002527511.1 | 0 | 23 | 755 | 21 | 785 | Beta-glucosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 9.99995e-41 | 110 | 751 | 91 | 734 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3u48_A | 9.99995e-41 | 110 | 751 | 91 | 734 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3u4a_B | 5e-40 | 110 | 751 | 91 | 734 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 3u4a_A | 5e-40 | 110 | 751 | 91 | 734 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 2x41_A | 2e-35 | 75 | 760 | 46 | 713 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
