Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015221m |
Family | CE8 |
Protein Properties | Length: 561 Molecular Weight: 61941.2 Isoelectric Point: 9.974 |
Chromosome | Chromosome/Scaffold: 3 Start: 3414975 End: 3416816 |
Description | root hair specific 12 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 254 | 545 | 0 |
NIVVAKDGSGKYRTISRALQDVPEKSEKRTIIYVKKGVYFENVKVEKKMWNVVVVGDGASKSIVSGRLNVIDGTPTFKTATFAVFGKGFMARDMGFINTA GPSKHQAVALMVSADHAAIYRCTMNAYQDTLYVHAQRQFYRDCTIIGTVDFIFGNSASVLQNCRILPRRPMKGQQITITAQGRTDPNMNTGISIHRCNIS PLGDLTDVKTFLGRPWKNFSTTVVMDSFLHGFVDRKGWLPWTGDSAPDTIFYGEYKNTGAGASTRNRVKWKGLRFLSTKEANRFTVKPFLDG |
Full Sequence |
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Protein Sequence Length: 561 Download |
MSSSYGKVDE REHVMLEARR KTRKRIATIV VSLVILAVIV IGAVLGTMAH KKSSETVETN 60 SNGDSISVSI KAVCDVTLHK DKCLETFRSA PNASSLNPEE LFKYAVQITM VEVLKALNAF 120 SSSGDLKSNI TMDTCAELLD LTIDNLNNTL TSSSNSAVTG PELVDDLRTW LSSAVTYQET 180 CVETLPPDMK PFGESHLKNS TELSSNALAI ITWLGKIADS FKLRRRLLTT ADVEVDFHIG 240 RRLLQSTDLR KVANIVVAKD GSGKYRTISR ALQDVPEKSE KRTIIYVKKG VYFENVKVEK 300 KMWNVVVVGD GASKSIVSGR LNVIDGTPTF KTATFAVFGK GFMARDMGFI NTAGPSKHQA 360 VALMVSADHA AIYRCTMNAY QDTLYVHAQR QFYRDCTIIG TVDFIFGNSA SVLQNCRILP 420 RRPMKGQQIT ITAQGRTDPN MNTGISIHRC NISPLGDLTD VKTFLGRPWK NFSTTVVMDS 480 FLHGFVDRKG WLPWTGDSAP DTIFYGEYKN TGAGASTRNR VKWKGLRFLS TKEANRFTVK 540 PFLDGGRWLP VTKVPFRSGL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 1.0e-146 | 69 | 560 | 517 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 4.0e-152 | 5 | 560 | 595 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 0 | 2 | 560 | 569 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 254 | 545 | 297 | + Pectinesterase. | ||
PLN02314 | PLN02314 | 0 | 4 | 560 | 588 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO42295.1 | 0 | 3 | 558 | 2 | 562 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_187682.1 | 0 | 1 | 560 | 1 | 561 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_196115.1 | 0 | 3 | 558 | 2 | 562 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002311918.1 | 0 | 1 | 560 | 1 | 568 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316458.1 | 0 | 1 | 560 | 1 | 569 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 254 | 560 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 252 | 560 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-18 | 254 | 551 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-18 | 254 | 551 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-18 | 254 | 551 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |