Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015374m |
Family | CE8 |
Protein Properties | Length: 318 Molecular Weight: 35161.8 Isoelectric Point: 6.2458 |
Chromosome | Chromosome/Scaffold: 3 Start: 4829120 End: 4830166 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 13 | 305 | 0 |
DITVANDGSGDFVKITEAISSIAEKTTPVVIYVKAGIYYENVIVSRDQVTMYGDGKQRTIVSGNLNRLDHPDYTTYQTATFSVTGNEFIVKDMGFVNVAG PTKHQVVAFHTRSTHSVMFRCAFNGYQDTLYAHEGKQLYRECDIVGTVDFIFGEASAVFEMCRIMPRKPLSGQYITITAQNANDNKARTGFSIIKSRIFP FDENLTAAVYLGRPWGSHATVAIMESELGPCIDPRGWVAWNRSLDPPPPTVSLGEYRNYGPGSTVSKRVKWVGYTPAMTDEEAEACSIQALIN |
Full Sequence |
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Protein Sequence Length: 318 Download |
MSRTLANCDL KPDITVANDG SGDFVKITEA ISSIAEKTTP VVIYVKAGIY YENVIVSRDQ 60 VTMYGDGKQR TIVSGNLNRL DHPDYTTYQT ATFSVTGNEF IVKDMGFVNV AGPTKHQVVA 120 FHTRSTHSVM FRCAFNGYQD TLYAHEGKQL YRECDIVGTV DFIFGEASAV FEMCRIMPRK 180 PLSGQYITIT AQNANDNKAR TGFSIIKSRI FPFDENLTAA VYLGRPWGSH ATVAIMESEL 240 GPCIDPRGWV AWNRSLDPPP PTVSLGEYRN YGPGSTVSKR VKWVGYTPAM TDEEAEACSI 300 QALINQEGWL NNTCIPY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02933 | PLN02933 | 1.0e-91 | 13 | 317 | 314 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 2.0e-93 | 10 | 316 | 317 | + Putative pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 6.0e-107 | 3 | 317 | 320 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-121 | 13 | 304 | 300 | + Pectinesterase. | ||
PLN02314 | PLN02314 | 3.0e-130 | 3 | 317 | 318 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65650.1 | 0 | 3 | 315 | 270 | 581 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_175787.1 | 0 | 3 | 315 | 270 | 581 | ATPME1; pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | Q43111 | 0 | 7 | 317 | 267 | 577 | PME3_PHAVU RecName: Full=Pectinesterase 3; Short=PE 3; AltName: Full=Pectin methylesterase 3; Flags: Precursor |
RefSeq | XP_002304256.1 | 0 | 3 | 317 | 271 | 584 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532945.1 | 0 | 3 | 317 | 271 | 585 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 16 | 317 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 10 | 317 | 5 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 3e-22 | 24 | 279 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 3e-22 | 24 | 279 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 3e-22 | 24 | 279 | 18 | 315 | A Chain A, Pectin Methylesterase From Carrot |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO922369 | 268 | 52 | 317 | 0 |
DT755207 | 275 | 45 | 317 | 0 |
EL470553 | 271 | 3 | 270 | 0 |
GW884295 | 257 | 50 | 304 | 0 |
DY985000 | 253 | 36 | 286 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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