y
Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10015428m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42732.9 Isoelectric Point: 8.3831 |
Chromosome | Chromosome/Scaffold: 3 Start: 2542051 End: 2543564 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 44 | 376 | 0 |
TSACQSPSPSKVVIPKGEFKLREIEMRGPCKAPIEITIQGTVKADGNAIQGKDKWVVFGNINGFKLNGGGAFDGEGNASWRVNNCHKTFQCKKLPISIRF DFVLNSEIRDISSIDSKNFHINVLGAKNMTMDNIKIIAPEESPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY GHEQDVSGIRIINCTLQQTDNGLRIKTWPSAACSTTAFDIHFEDIIVKNVSNPILIDQEYCPWNQCNKQKPSTIKLVNTSFKNIRGTSGNKDAVKLLCSK GYPCQNVEIGDVDIKYNGADGPATFQCSNVSPK |
Full Sequence |
---|
Protein Sequence Length: 397 Download |
MGAYFGVSII FIICLSGFSA NAEVFTIRSS SGSDITQALL KAFTSACQSP SPSKVVIPKG 60 EFKLREIEMR GPCKAPIEIT IQGTVKADGN AIQGKDKWVV FGNINGFKLN GGGAFDGEGN 120 ASWRVNNCHK TFQCKKLPIS IRFDFVLNSE IRDISSIDSK NFHINVLGAK NMTMDNIKII 180 APEESPNTDG IHLGRSDGVK ILNSFISTGD DCISVGDGMK NLHVEKVTCG PGHGISVGSL 240 GRYGHEQDVS GIRIINCTLQ QTDNGLRIKT WPSAACSTTA FDIHFEDIIV KNVSNPILID 300 QEYCPWNQCN KQKPSTIKLV NTSFKNIRGT SGNKDAVKLL CSKGYPCQNV EIGDVDIKYN 360 GADGPATFQC SNVSPKLLGT QNPKACSAPM TKAPKM* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-75 | 25 | 384 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-78 | 33 | 386 | 360 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-81 | 21 | 386 | 371 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-121 | 16 | 386 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 8.0e-125 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38468.1 | 0 | 1 | 395 | 1 | 395 | pollen-expressed protein MF9c [Brassica oleracea] |
GenBank | ABL63521.1 | 0 | 1 | 395 | 1 | 395 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
GenBank | ABN13878.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000004 | 111 | 303 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000002 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000002 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000002 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000002 | 45 | 373 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |