Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015541m |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42277.5 Isoelectric Point: 7.9516 |
Chromosome | Chromosome/Scaffold: 3 Start: 2547682 End: 2549350 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 43 | 375 | 0 |
TSACQAPTASKVVIPKGEFKLGEIEMAGPCKAPIEINLQGTVKADGTAIHGKERWVVFTKIVGFKLNGGGTFDGEGNAAWRVNNCHQTEACKKLPISIRF DFVEKAEIRDISTIDAKNFHINVIGAKEMVFDNVKVIAPAESPNTDGIHLGRSDGVKILNSKIATGDDCISVGDGMKNLHVEKVVCGPGHGISVGSLGRY GHEQDVAGITVKNCTLIGTDNGLRIKTWPSAACSTTASGIHFEDIILNNVSNPILIDQEYCPWNHCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSK AHPCVNVEIGNINLEYKGADGPPTFTCSNVTPK |
Full Sequence |
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Protein Sequence Length: 401 Download |
MGSYLGIFAI LFVLLGVSAN AEVFPVGGSP GSDITQALLK AFTSACQAPT ASKVVIPKGE 60 FKLGEIEMAG PCKAPIEINL QGTVKADGTA IHGKERWVVF TKIVGFKLNG GGTFDGEGNA 120 AWRVNNCHQT EACKKLPISI RFDFVEKAEI RDISTIDAKN FHINVIGAKE MVFDNVKVIA 180 PAESPNTDGI HLGRSDGVKI LNSKIATGDD CISVGDGMKN LHVEKVVCGP GHGISVGSLG 240 RYGHEQDVAG ITVKNCTLIG TDNGLRIKTW PSAACSTTAS GIHFEDIILN NVSNPILIDQ 300 EYCPWNHCNK QKPSTIKLVD ISFKNIRGTS GNKDAVKLLC SKAHPCVNVE IGNINLEYKG 360 ADGPPTFTCS NVTPKLVGTQ NPKACSAGPA PKPTTKGGDL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-73 | 24 | 383 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-78 | 24 | 385 | 368 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 9.0e-80 | 8 | 385 | 392 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-118 | 32 | 385 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-127 | 46 | 385 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM74219.1 | 0 | 1 | 392 | 1 | 392 | AF518563_1 putative pollen polygalacturonase [Brassica oleracea] |
GenBank | AAP42648.1 | 0 | 1 | 392 | 1 | 392 | polygalacturonase [Brassica napus] |
EMBL | CAA05892.1 | 0 | 1 | 390 | 1 | 391 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 390 | 1 | 391 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_187441.1 | 0 | 1 | 397 | 1 | 399 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-18 | 110 | 356 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000008 | 44 | 302 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000008 | 44 | 302 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000008 | 44 | 302 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000008 | 44 | 302 | 16 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |