| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10015662m |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 48007.6 Isoelectric Point: 8.892 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2586490 End: 2588904 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 426 | 0 |
| WQSACSSTGIVYVVVPKNRKYTIKPVTFSGPCKSSMIVFKIYGMIEAWENPSDYKVRRRWIVFENVTNLRVEGGGRIDGNGHIWWSKSCKINPKLPCLGA PTAVMFMECNNLRVSNIRLENAQQMHLTFQNCQNVKALRLRVTSPGDSPNTDGIHVSGSRNILIQDSVVGTGDDCISIVSGSENVRATGITCGPGHGISI GSLGAGNSEAYVSNVVINKATLIGTTNGVRIKTWQGGRGMAKNIIFQDILMKNVTNPILINQDYCDRVESCPEQKSAVQVSNVLYKNIQGTSSTPVAVKF QCSKSIPCRGISMQDVELVDQTQQDVSKASCSNVRL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MYEKFINLSA FLLMFLPCCL SSYPFDHRDD PFKASDVYYE TSHLHGHITR NSHTKSHHGY 60 APRSSPQAFN VNSFGAKANG NDDSQAFMKA WQSACSSTGI VYVVVPKNRK YTIKPVTFSG 120 PCKSSMIVFK IYGMIEAWEN PSDYKVRRRW IVFENVTNLR VEGGGRIDGN GHIWWSKSCK 180 INPKLPCLGA PTAVMFMECN NLRVSNIRLE NAQQMHLTFQ NCQNVKALRL RVTSPGDSPN 240 TDGIHVSGSR NILIQDSVVG TGDDCISIVS GSENVRATGI TCGPGHGISI GSLGAGNSEA 300 YVSNVVINKA TLIGTTNGVR IKTWQGGRGM AKNIIFQDIL MKNVTNPILI NQDYCDRVES 360 CPEQKSAVQV SNVLYKNIQG TSSTPVAVKF QCSKSIPCRG ISMQDVELVD QTQQDVSKAS 420 CSNVRLNTRG NVSPLCT* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN03003 | PLN03003 | 2.0e-95 | 64 | 425 | 372 | + Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 4.0e-109 | 56 | 434 | 383 | + polygalacturonase/glycoside hydrolase family protein |
| pfam00295 | Glyco_hydro_28 | 3.0e-114 | 95 | 424 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 2.0e-139 | 12 | 437 | 432 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 2.0e-140 | 58 | 434 | 383 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 61 | 436 | 80 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAF21207.1 | 0 | 1 | 437 | 1 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187454.2 | 0 | 1 | 437 | 1 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002313308.1 | 0 | 61 | 437 | 1 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 52 | 436 | 63 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-24 | 150 | 414 | 102 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-18 | 83 | 354 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-18 | 83 | 354 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-18 | 83 | 354 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-18 | 83 | 354 | 7 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
