Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015686m |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 46246.3 Isoelectric Point: 8.8832 |
Chromosome | Chromosome/Scaffold: 3 Start: 2550841 End: 2552495 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 430 | 0 |
AACAAGGTIIVPKGEYLVEALEFKGPCKGPVTMELNGNLKAPAAVKSTKPHSGWVDFENIADFTLNGNKAIFDGQGALAWKANDCAKTGKCNSLPINIRF TGLTNSKIKSITSTNSKLFHINILNCKNITLEDIGINAPPESLNTDGIHIGRSNGVNILGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRY PNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGVASNILFEDITMDNVSTPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKNIKGTSATKVAVKLMCSKG VPCTNIALSDINLVHNGKEGPAVSACSNIKP |
Full Sequence |
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Protein Sequence Length: 450 Download |
MVGFRRARGV LLVVLVVMAT TLANGTPIVD KAKDAAKSVG DKAKDTAAAV EAKAKDTAAA 60 VGAKVPGAKA GGASSDVKAL GAKGDGKTDD CAAFGAAWKA ACAAGGTIIV PKGEYLVEAL 120 EFKGPCKGPV TMELNGNLKA PAAVKSTKPH SGWVDFENIA DFTLNGNKAI FDGQGALAWK 180 ANDCAKTGKC NSLPINIRFT GLTNSKIKSI TSTNSKLFHI NILNCKNITL EDIGINAPPE 240 SLNTDGIHIG RSNGVNILGA KIKTGDDCVS IGDGTENLIV ENVECGPGHG ISIGSLGRYP 300 NEQPVKGVTV RKCLIKNTDN GVRIKTWPGS PPGVASNILF EDITMDNVST PVLIDQEYCP 360 YGHCKAGVPS QVKLSDVTIK NIKGTSATKV AVKLMCSKGV PCTNIALSDI NLVHNGKEGP 420 AVSACSNIKP VLTGKLVPAA CTEVAKPGP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-69 | 77 | 438 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-70 | 77 | 441 | 373 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 9.0e-75 | 76 | 441 | 369 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-102 | 107 | 441 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-113 | 76 | 442 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 1 | 449 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 1 | 449 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 1 | 449 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-21 | 171 | 428 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-21 | 171 | 428 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-21 | 171 | 428 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-21 | 171 | 428 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-21 | 171 | 428 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |