y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015726m |
Family | CE8 |
Protein Properties | Length: 345 Molecular Weight: 38725.8 Isoelectric Point: 8.541 |
Chromosome | Chromosome/Scaffold: 3 Start: 5942016 End: 5943429 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 46 | 332 | 0 |
IIVDIEGKGDYTSVQKAIDAVPVGNSNWIIVHVRKGIYKERVHIPENKPFIFMRGNGKGKTVIESSQSSVDNVASATFKVEANHFVAFGISIRNDAPVGM AFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSVFNNCEIFVVSDKRVKPYGSITAHHRESAEENTGYVFIRGK VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTENLYHGEYKCHGPGAERQQRSDWAKELTKQEVESFLSIDFIDG |
Full Sequence |
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Protein Sequence Length: 345 Download |
MDHRTRMVLV LTLVVMSAWG SDASAMQKTK FDAPLLTEKI ATNRSIIVDI EGKGDYTSVQ 60 KAIDAVPVGN SNWIIVHVRK GIYKERVHIP ENKPFIFMRG NGKGKTVIES SQSSVDNVAS 120 ATFKVEANHF VAFGISIRND APVGMAFTSE NQSVAAFVAA DKVAFYHCAF YSLHNTLFDN 180 KGRHYYHECY IQGSIDFIFG RATSVFNNCE IFVVSDKRVK PYGSITAHHR ESAEENTGYV 240 FIRGKVYGID EVYLGRAKGP YSRVIFAKTY LSKTVVPDGW TNWSYHGSTE NLYHGEYKCH 300 GPGAERQQRS DWAKELTKQE VESFLSIDFI DGTSWLPVWL QQKS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-77 | 34 | 336 | 306 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 1.0e-78 | 44 | 336 | 297 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-83 | 46 | 336 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-88 | 39 | 337 | 309 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 17 | 340 | 324 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 9 | 340 | 15 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 1 | 343 | 1 | 343 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 26 | 340 | 34 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 5 | 339 | 13 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 28 | 340 | 39 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.00053e-42 | 45 | 336 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-36 | 47 | 336 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-17 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-17 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-17 | 56 | 321 | 18 | 333 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |