Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015950m |
Family | GH28 |
Protein Properties | Length: 448 Molecular Weight: 48537.6 Isoelectric Point: 8.8674 |
Chromosome | Chromosome/Scaffold: 3 Start: 2544350 End: 2546523 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 377 | 0 |
FKAACQAPTPSKVLIPKGQFRLGEIIMEGPCKFPIEFTLLGTVQADGNAGQGKDKWVVFRKMNGFKLNGGGTFDGQGTAAWRVNNCHQTKSCKKLPISLR FDFVTNAVIRDISSVDSKNFHVNVIGARNMTFDNVKILAPAESPNTDGIHLGRSDGVSIINSRISTGDDCVSVGDGMVNLLVKNVLCGPGHGISVGSLGR YGHEENVRGIRVINCTVQETDNGLRIKTWPSAACSTTASDIHFEDIILRNVSNPILIDQEYCPWNHCNKQKSSSIKLANISFRKIRGTSGNKDAVKLLCS KGYPCENVVVGDIDIQYTGADGPATFMCSNVRPK |
Full Sequence |
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Protein Sequence Length: 448 Download |
MGSYFGISTI FVVCLLGLSA NGHEVFRIGS PPGSDITQAF FKAFKAACQA PTPSKVLIPK 60 GQFRLGEIIM EGPCKFPIEF TLLGTVQADG NAGQGKDKWV VFRKMNGFKL NGGGTFDGQG 120 TAAWRVNNCH QTKSCKKLPI SLRFDFVTNA VIRDISSVDS KNFHVNVIGA RNMTFDNVKI 180 LAPAESPNTD GIHLGRSDGV SIINSRISTG DDCVSVGDGM VNLLVKNVLC GPGHGISVGS 240 LGRYGHEENV RGIRVINCTV QETDNGLRIK TWPSAACSTT ASDIHFEDII LRNVSNPILI 300 DQEYCPWNHC NKQKSSSIKL ANISFRKIRG TSGNKDAVKL LCSKGYPCEN VVVGDIDIQY 360 TGADGPATFM CSNVRPKLVG IQNPKACNTP PVLTQPKHTR VIQAPYRFED ASESYVRVIG 420 PFVDSCYKSS LTQRTKKDEC FCSKARA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-70 | 34 | 388 | 362 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 7.0e-75 | 12 | 387 | 387 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-77 | 34 | 387 | 360 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-116 | 8 | 387 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-124 | 48 | 374 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN13878.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_187440.1 | 0 | 1 | 397 | 1 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 4 | 396 | 5 | 393 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 68 | 340 | 51 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000003 | 177 | 331 | 154 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.0000000000007 | 60 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000007 | 60 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000007 | 60 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |