Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10015952m |
Family | CBM43 |
Protein Properties | Length: 477 Molecular Weight: 52344.5 Isoelectric Point: 7.7352 |
Chromosome | Chromosome/Scaffold: 3 Start: 8840488 End: 8842115 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 387 | 470 | 1.9e-26 |
WCVAIDGASEAELGQALNFACGRSNETCAALAPGKECYAPVSVSWHASYAFSSYWAQFRNQSSQCYFNGLARETTTNPGNERCK | |||
GH17 | 37 | 361 | 0 |
IGINYGKLGNNLPSPYQSINLIKTIKAGHVKLYDADPETLKLLSKTNLYVTIMVPNDQIISVGSDQAAADKWVATNVLPFYPQTRIRFVLVGNEVLSYSS DQDKQIWANLVPAMRKVVNSLRARGIHNIKVGTPLAMDALRSSFPPSSGAFREDLAVPVMLPLLKFLNGTNSFFFLDVYPYFPWSTDPVNNHLDYALFES NSTYTDPQTGLVYTNLLDQMLDSVIFAMTKLGYPDVRLAISETGWPNSGDIHETGANVLNAATYNRNLIKKMTANPPLGTPARRGAPIPTFLFSLFNENQ KPGSGTERHWGILNPDGTPIYEIDF |
Full Sequence |
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Protein Sequence Length: 477 Download |
MSHLALFLFT LLVLSSSCCY AIGSQNNRTV LALASRIGIN YGKLGNNLPS PYQSINLIKT 60 IKAGHVKLYD ADPETLKLLS KTNLYVTIMV PNDQIISVGS DQAAADKWVA TNVLPFYPQT 120 RIRFVLVGNE VLSYSSDQDK QIWANLVPAM RKVVNSLRAR GIHNIKVGTP LAMDALRSSF 180 PPSSGAFRED LAVPVMLPLL KFLNGTNSFF FLDVYPYFPW STDPVNNHLD YALFESNSTY 240 TDPQTGLVYT NLLDQMLDSV IFAMTKLGYP DVRLAISETG WPNSGDIHET GANVLNAATY 300 NRNLIKKMTA NPPLGTPARR GAPIPTFLFS LFNENQKPGS GTERHWGILN PDGTPIYEID 360 FTGTRPVSSF GELPKPDNNV PFKGNVWCVA IDGASEAELG QALNFACGRS NETCAALAPG 420 KECYAPVSVS WHASYAFSSY WAQFRNQSSQ CYFNGLARET TTNPGNERCK FPSVTL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-5 | 276 | 352 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-16 | 387 | 457 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-30 | 387 | 471 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-127 | 37 | 361 | 326 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM64490.1 | 0 | 15 | 476 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
GenBank | ABK28569.1 | 0 | 15 | 476 | 15 | 476 | unknown [Arabidopsis thaliana] |
EMBL | CAA49513.1 | 0 | 6 | 476 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
RefSeq | NP_189019.1 | 0 | 15 | 476 | 15 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | NP_193144.1 | 0 | 1 | 476 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 37 | 361 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 37 | 361 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 37 | 361 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 37 | 361 | 1 | 306 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 37 | 361 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |