| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10015996m |
| Family | GH10 |
| Protein Properties | Length: 557 Molecular Weight: 62959.9 Isoelectric Point: 5.7025 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11980964 End: 11983032 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 191 | 450 | 0 |
| KPSFLLGCAMNYRILESDSYREWFVSRFRLTSFTNEMKWYTNEAVRGLENYSLADLMMSTAEENKILVKGHTVLWDDKTWQPNWVKKITDPEDLKNVTIN RINSVMKRYKGRVIGWDVMNENVHFSYFEDMLGKNASAIFYSLASKLDPDIPLFLNEFNTIEYAKDGNGSPVKVKKKMEEIVSYSGNMKIKGGIGAQGHF APKQPNLVYMRSALDTLGSLGFPVWLTEVDMAKCPDQVRYMEDILREAYSHPAVEGIIIY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 557 Download |
| MAYIISSLLL ALLGSVLCMD PFSYDQSLTS ECFTEPPQSS VKTGEGFKEL KINENVVESV 60 DLEEGNIYSI SAWVKLRNEN QRKVGMALKG KNGRNVYGGE VMAKKGCWSL LKGGITADFT 120 GHLDIIFEID GLATAEISVQ NVRLQGFNKT QWRLQQDQVI EKIRKNKVRF QMIFQNESAL 180 KGSVISIEQI KPSFLLGCAM NYRILESDSY REWFVSRFRL TSFTNEMKWY TNEAVRGLEN 240 YSLADLMMST AEENKILVKG HTVLWDDKTW QPNWVKKITD PEDLKNVTIN RINSVMKRYK 300 GRVIGWDVMN ENVHFSYFED MLGKNASAIF YSLASKLDPD IPLFLNEFNT IEYAKDGNGS 360 PVKVKKKMEE IVSYSGNMKI KGGIGAQGHF APKQPNLVYM RSALDTLGSL GFPVWLTEVD 420 MAKCPDQVRY MEDILREAYS HPAVEGIIIY AGPEVSGFSK LTLADKDFNN TETGDLIDKL 480 LQEWKQEPAE IPIKNHEHND GEEGQIIRFS PEISLLHGHY TVTVTNPSMN TLSTSFSLEV 540 TKEMGHHQEV QLVINA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 3.0e-29 | 225 | 421 | 212 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-45 | 188 | 447 | 280 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-73 | 227 | 477 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC69373.1 | 0 | 35 | 556 | 2 | 552 | 1,4-beta-xylan endohydrolase [Arabidopsis thaliana] |
| GenBank | AAQ65190.1 | 0 | 35 | 556 | 2 | 529 | At2g14690 [Arabidopsis thaliana] |
| RefSeq | NP_179076.3 | 0 | 18 | 556 | 26 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 35 | 556 | 2 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 8 | 556 | 15 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 5e-25 | 225 | 481 | 47 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1ta3_B | 1e-24 | 196 | 422 | 17 | 242 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1x_A | 1e-24 | 183 | 483 | 5 | 303 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1w_A | 1e-24 | 183 | 483 | 5 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-24 | 183 | 422 | 5 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
