| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10016120m |
| Family | GT19 |
| Protein Properties | Length: 462 Molecular Weight: 51615.2 Isoelectric Point: 8.4618 |
| Chromosome | Chromosome/Scaffold: 3 Start: 9795614 End: 9797902 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT19 | 42 | 419 | 0 |
| VFIVSGEVSGDNIGSRLMSSLKKLSPLPLRFHGVGGSLMCKQGLSCLFPMEDLAVMGMWELLPHLYKFRVKLKETIDAAVKFKPHVVVTVDSKGFSFRLL KELRARYNQQRLENCPVHFHYVAPSFWAWKGGESRLGGLSEFVDHLFCILPNEESVCREHGVEATFVGHPVLEDASEFYLARTFKPEELKLEGLSLSKYS LPFDSTVISVLPGSRLQEVERMLPIFSKAMKLLKDPFPKLVTLIHVAPNSQVDHYIGESLHEWPVPAIVVPSGSTQLKYDAFGASQAALCTSGTVAVELQ LARLPSLVAYRAHFLTELIIRYKANIPYISLPNILLDSPIIPEALFKACNPSNLAVTLEKLLLDEKMREKQVVASEKL | |||
| Full Sequence |
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| Protein Sequence Length: 462 Download |
| MMFPISKNKP CFPLSAFTKR YSSFQSTKSV IDKAATDGEL RVFIVSGEVS GDNIGSRLMS 60 SLKKLSPLPL RFHGVGGSLM CKQGLSCLFP MEDLAVMGMW ELLPHLYKFR VKLKETIDAA 120 VKFKPHVVVT VDSKGFSFRL LKELRARYNQ QRLENCPVHF HYVAPSFWAW KGGESRLGGL 180 SEFVDHLFCI LPNEESVCRE HGVEATFVGH PVLEDASEFY LARTFKPEEL KLEGLSLSKY 240 SLPFDSTVIS VLPGSRLQEV ERMLPIFSKA MKLLKDPFPK LVTLIHVAPN SQVDHYIGES 300 LHEWPVPAIV VPSGSTQLKY DAFGASQAAL CTSGTVAVEL QLARLPSLVA YRAHFLTELI 360 IRYKANIPYI SLPNILLDSP IIPEALFKAC NPSNLAVTLE KLLLDEKMRE KQVVASEKLI 420 RLLHPPESKL SNIIHCDDLE SHRYTPSLLA ASTILSYDTK R* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK01021 | lpxB | 1.0e-36 | 43 | 423 | 389 | + lipid-A-disaccharide synthase; Reviewed | ||
| TIGR00215 | lpxB | 7.0e-45 | 42 | 424 | 387 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 8.0e-68 | 42 | 430 | 393 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 3.0e-89 | 40 | 412 | 373 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 5.0e-95 | 40 | 412 | 375 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28885.1 | 0 | 34 | 461 | 2 | 432 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC71491.1 | 0 | 26 | 461 | 30 | 469 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
| RefSeq | NP_178535.2 | 0 | 1 | 457 | 1 | 452 | transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002458499.1 | 0 | 26 | 458 | 5 | 442 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| RefSeq | XP_002528957.1 | 0 | 5 | 457 | 12 | 466 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FY429474 | 267 | 2 | 268 | 0 |
| DK475923 | 217 | 2 | 217 | 0 |
| DK547548 | 208 | 254 | 460 | 0 |
| EV196281 | 224 | 2 | 224 | 0 |
| DK458146 | 224 | 2 | 218 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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