| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10016140m |
| Family | GT64 |
| Protein Properties | Length: 318 Molecular Weight: 35954.2 Isoelectric Point: 7.7145 |
| Chromosome | Chromosome/Scaffold: 3 Start: 12789524 End: 12790477 |
| Description | Nucleotide-diphospho-sugar transferases superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT64 | 36 | 296 | 0 |
| TVLINGYSESRIPLLQTIVASYSAASIVSSILVLWGNPNTADHVLDQLYQNLTQYSPGTASISLIQQSSSSLNARFLPRSSVDTRAVLICDDDVEIDRRS LELAFSVWKSNPDRLVGPFVRSHGFDLQGKEWIYTVHPDKYSIVLTKFMVMKQDYLFDYSCKGGLEMKEMRMVVERMRNCEDILMNFVVADKLRAGPIMV GAERLRDWGDARNEEEVGEGVRDVGLSSRRVEHRKRRGKCIREFHRIMGKMPLLYSYGKVV | |||
| Full Sequence |
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| Protein Sequence Length: 318 Download |
| IVTDLVLCRT LPGDPDPCDS TTSQREFEKL RSDQLTVLIN GYSESRIPLL QTIVASYSAA 60 SIVSSILVLW GNPNTADHVL DQLYQNLTQY SPGTASISLI QQSSSSLNAR FLPRSSVDTR 120 AVLICDDDVE IDRRSLELAF SVWKSNPDRL VGPFVRSHGF DLQGKEWIYT VHPDKYSIVL 180 TKFMVMKQDY LFDYSCKGGL EMKEMRMVVE RMRNCEDILM NFVVADKLRA GPIMVGAERL 240 RDWGDARNEE EVGEGVRDVG LSSRRVEHRK RRGKCIREFH RIMGKMPLLY SYGKVVNSVG 300 EQGLCRKAGK LVFCDRD* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09258 | Glyco_transf_64 | 3.0e-72 | 35 | 296 | 263 | + Glycosyl transferase family 64 domain. Members of this family catalyze the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analog of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0016758 | transferase activity, transferring hexosyl groups |
| GO:0031227 | intrinsic to endoplasmic reticulum membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61012.1 | 0 | 1 | 317 | 15 | 329 | unknown [Arabidopsis thaliana] |
| EMBL | CAN68561.1 | 0 | 16 | 316 | 27 | 326 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_001077854.1 | 0 | 1 | 317 | 23 | 337 | glycosyltransferase family protein 47 [Arabidopsis thaliana] |
| RefSeq | NP_565236.1 | 0 | 1 | 317 | 15 | 329 | glycosyltransferase family protein 47 [Arabidopsis thaliana] |
| RefSeq | XP_002523753.1 | 0 | 9 | 316 | 34 | 347 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1on8_B | 4e-18 | 33 | 291 | 28 | 275 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1on8_A | 4e-18 | 33 | 291 | 28 | 275 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1on6_B | 4e-18 | 33 | 291 | 28 | 275 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1on6_A | 4e-18 | 33 | 291 | 28 | 275 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1omz_B | 4e-18 | 33 | 291 | 28 | 275 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EY919385 | 242 | 78 | 318 | 0 |
| GR443711 | 262 | 25 | 283 | 0 |
| DR379286 | 203 | 116 | 318 | 0 |
| DK555363 | 206 | 116 | 318 | 0 |
| DK530528 | 203 | 119 | 318 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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