| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10016149m |
| Family | PL1 |
| Protein Properties | Length: 473 Molecular Weight: 53685.9 Isoelectric Point: 9.3618 |
| Chromosome | Chromosome/Scaffold: 3 Start: 283794 End: 285517 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 183 | 389 | 0 |
| VIQKEPLWIIFKHDMSIRLSQELMIASHKTIDARGSNVHIAYGAGITIQYVHNIIIHGLHIHHIVKSSGGLIRDSINHFGQRGQADGDGISIFGATNIWL DHISMSRCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQDNNQDDKKMQVTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILS HGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| METARLLKLV CVICIASFIP TIRANVPETD EYWVNKANEA RKHTLMAYHP DPYDIVDHFH 60 ERHYDNSTDV EETEEDKAVD SAEEEDIEMI SSPTNSTRRS LSGKRRGRGK WSKLRGPCTA 120 SNPIDKCWRC QPDWAKRRKK LVHCVRGFGY KVTGGKRGRI YVVTSPRDDD TVNPRPGTLR 180 HAVIQKEPLW IIFKHDMSIR LSQELMIASH KTIDARGSNV HIAYGAGITI QYVHNIIIHG 240 LHIHHIVKSS GGLIRDSINH FGQRGQADGD GISIFGATNI WLDHISMSRC QDGLIDAIMG 300 STAITISNSH FTHHNDVMLL GAQDNNQDDK KMQVTVAYNH FGKGLVQRMP RIRWGFVHVV 360 NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT KRDYASEGEW KHWNWRSEKD 420 YFLNGAHFRE SGNPHFKCSH SRQQMIKPKH GVAVSKLTKY AGALDCRVGK AC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-16 | 25 | 69 | 45 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 4.0e-26 | 153 | 387 | 255 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-57 | 203 | 387 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-67 | 196 | 391 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM60924.1 | 0 | 1 | 472 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | ABK28696.1 | 0 | 1 | 472 | 1 | 472 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 1 | 472 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197015.4 | 0 | 1 | 472 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9LFP5 | 0 | 1 | 472 | 1 | 472 | PEL19_ARATH RecName: Full=Putative pectate lyase 19; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 122 | 464 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 122 | 464 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-18 | 191 | 389 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 5e-16 | 203 | 387 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.0000000000002 | 205 | 387 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
