| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10016343m |
| Family | GH5 |
| Protein Properties | Length: 417 Molecular Weight: 46812.1 Isoelectric Point: 9.5214 |
| Chromosome | Chromosome/Scaffold: 3 Start: 3474737 End: 3476348 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 42 | 373 | 5.9e-34 |
| NGKPFYADGFNAYWLTYEATDPTARYKITHACENAIRHGLTIARTWGFNDGASYRALQTAPGFYDENTFQGLDFVISEAKRVGLKMIITFVNNWSDYGGK KQYVDWAKSKGEKVSSDDDFYTNSLTKQFYKNHVKTMVNRVNTFTKVAYKDEPTIMGWELMNEPQCKSDRSGKTLMAWINEMAPYVKSVDPNHLLTTGHE GFYGDSSPQRKTSLNPPAANVVGADFIANHNIDAIDFASIHCAPDLWFQKLNQKTRMHFLRKWVEGHIEDAHNILQKPLILGEFGIGTNVRGYTLAKRDA IFTLTYKIIYASAQRGGSGGGALFWDLISDDM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 417 Download |
| MKYLRFLVFL ATVISQYHRD LGVEATSSEG FVSRKGVQFI LNGKPFYADG FNAYWLTYEA 60 TDPTARYKIT HACENAIRHG LTIARTWGFN DGASYRALQT APGFYDENTF QGLDFVISEA 120 KRVGLKMIIT FVNNWSDYGG KKQYVDWAKS KGEKVSSDDD FYTNSLTKQF YKNHVKTMVN 180 RVNTFTKVAY KDEPTIMGWE LMNEPQCKSD RSGKTLMAWI NEMAPYVKSV DPNHLLTTGH 240 EGFYGDSSPQ RKTSLNPPAA NVVGADFIAN HNIDAIDFAS IHCAPDLWFQ KLNQKTRMHF 300 LRKWVEGHIE DAHNILQKPL ILGEFGIGTN VRGYTLAKRD AIFTLTYKII YASAQRGGSG 360 GGALFWDLIS DDMSNSKDPS GILLSNSSST VNIISEATRK LGLINAKVKF SRKIKN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12876 | Cellulase-like | 0.0002 | 189 | 272 | 93 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 2.0e-8 | 42 | 344 | 311 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-29 | 39 | 331 | 297 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB45852.1 | 0 | 1 | 414 | 1 | 409 | hypothetical protein [Thellungiella halophila] |
| RefSeq | NP_187700.1 | 0 | 1 | 412 | 1 | 411 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | NP_187701.1 | 0 | 1 | 404 | 1 | 402 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | NP_189675.1 | 0 | 1 | 364 | 1 | 346 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
| RefSeq | NP_201447.1 | 0 | 1 | 414 | 1 | 408 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 27 | 401 | 2 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 30 | 381 | 13 | 355 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 30 | 381 | 13 | 355 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 30 | 381 | 13 | 355 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 30 | 381 | 13 | 355 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
