Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016365m |
Family | CE8 |
Protein Properties | Length: 198 Molecular Weight: 22035.2 Isoelectric Point: 9.3252 |
Chromosome | Chromosome/Scaffold: 3 Start: 9002293 End: 9003120 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 34 | 198 | 0 |
VFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVIVGAGKRLTRVEWDDHYSAAQSPTFATLADNTVVKSLTFANTYNLPSK GKTNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFIFGSGQSIYQ |
Full Sequence |
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Protein Sequence Length: 198 Download |
MGTHRIIIGL VALCCFCLPH LIEAKPYGVY QQQVFVDQSG HGNFTTIQKA IDSVPINNRH 60 WFFINVKAGL YREKIKIPYE KPFIVIVGAG KRLTRVEWDD HYSAAQSPTF ATLADNTVVK 120 SLTFANTYNL PSKGKTNKNP RTPAVAALIG GDKSAFYSVG FAGIQDTLWD SDGRHYFHRC 180 TIQGAVDFIF GSGQSIYQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 9.0e-46 | 39 | 198 | 173 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 7.0e-46 | 36 | 198 | 164 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-48 | 36 | 198 | 163 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-49 | 34 | 198 | 165 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-140 | 1 | 198 | 198 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 1 | 198 | 1 | 194 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 1 | 198 | 1 | 198 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 0 | 1 | 198 | 1 | 193 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 34 | 198 | 1 | 161 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 34 | 198 | 48 | 208 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-19 | 34 | 198 | 9 | 168 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0.00000000000006 | 36 | 198 | 7 | 164 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000002 | 31 | 198 | 30 | 213 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000001 | 29 | 198 | 3 | 186 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000001 | 29 | 198 | 3 | 186 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |