Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016541m |
Family | GH28 |
Protein Properties | Length: 319 Molecular Weight: 32705.8 Isoelectric Point: 8.9138 |
Chromosome | Chromosome/Scaffold: 330 Start: 1754 End: 3408 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 141 | 299 | 0 |
KTGKCNSLPINVECGPGHGISIGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGVASNILFEDITMDNVSTPVLIDQEYCPYGHCKAGVPSQ VKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSACSNIKP |
Full Sequence |
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Protein Sequence Length: 319 Download |
MATTLANGTP IVDKAKDAAK SVGDKAKDTA AAVEAKAKDT AAAVGAKAFG AAWKAACAAG 60 GTIIVPKGEY LVEALEFKGP CKGPVTMELN GNLKAPAAVK STKPHSGWVD FENIADFTLN 120 GNKAIFDGQG ALAWKANDCA KTGKCNSLPI NVECGPGHGI SIGSLGRYPN EQPVKGVTVR 180 KCLIKNTDNG VRIKTWPGSP PGVASNILFE DITMDNVSTP VLIDQEYCPY GHCKAGVPSQ 240 VKLSDVTIKN IKGTSATKVA VKLMCSKGVP CTNIALSDIN LVHNGKEGPA VSACSNIKPV 300 LTGKLVPAAC TEVAKPGP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-7 | 61 | 157 | 97 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-13 | 62 | 152 | 91 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-39 | 130 | 310 | 183 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-53 | 138 | 310 | 175 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-58 | 137 | 311 | 178 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 130 | 318 | 255 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
DDBJ | BAH20364.1 | 0.000000000000008 | 116 | 153 | 1 | 38 | AT3G14040 [Arabidopsis thaliana] |
DDBJ | BAH20364.1 | 0 | 130 | 318 | 99 | 289 | AT3G14040 [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 1 | 153 | 18 | 194 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 130 | 318 | 255 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.000000000007 | 154 | 297 | 194 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000007 | 154 | 297 | 194 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000007 | 154 | 297 | 194 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000007 | 154 | 297 | 194 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.000000000007 | 154 | 297 | 194 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX190936 | 192 | 130 | 319 | 0 |
EY915412 | 192 | 130 | 319 | 0 |
EG525414 | 156 | 164 | 319 | 0 |
FD976063 | 192 | 130 | 319 | 0 |
EW738112 | 192 | 130 | 319 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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