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Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016634m |
Family | GT35 |
Protein Properties | Length: 991 Molecular Weight: 112149 Isoelectric Point: 5.4696 |
Chromosome | Chromosome/Scaffold: 5 Start: 3560056 End: 3565022 |
Description | Glycosyl transferase, family 35 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 178 | 985 | 0 |
ALKRLGFDLESVASQEPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEAAEDWLELSNPWEIVRNDVSYPIKFYGKVVFGS DGKKLWIGGEDIVSVAYDVPIPGYKTKTTINLRLWSTKAPSEDFDLSSYNSGKHTEAAEALFNAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIV TRFETRSGGNVNWEEFPEKVAVQMNDTHPTLCIPELMRILMDLKGLSWEDAWKITQRTVAYTNHTVLPEALEKWSLELMEKLLPRHVEIIEKIDEELVRT IVSEYGTADPNLLEEKLKAMRILENVELPSAFADVIVKPEKKPVAAKDTIDQLEDAKTVVKKEQEEENVGEEEEVIPEPTIKPPEMVRMANLAVVGGHAV NGVAEIHSEIVKQDVFNDFVQLWPEKFQNKTNGVTPRRWIRFCNPYLSDIITKWIGTEDWVLHTEKLAELRKFADNEDLQSEWRAAKKKNKLKVVSLIKE RTGYTVSPDAMFDIQIKRIHEYKRQLLNILGIVYRYKKMKEMSASEREKAYVPRVCIFGGKAFATYVQAKRIVKFITDVASTINHDPEIGDLLKVIFVPD YNVSVAELLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGAKADEIVNLRNERAEGKFVPDPTFEEVKKFVRSGV FGSNNYDELIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQKVSFIKLLCLTQYKTSSTFKFAINDLQRWTRMSILNTAGSFKFSSDRTIHEY AKDIWNIK |
Full Sequence |
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Protein Sequence Length: 991 Download |
MDTMRISGVS TGAEILVQCN SLSSLVSRRC DNGRWKTRNF PARSRTWRSS VKRKLPLVKS 60 ISSEPKEKVS DAVLDSEQEV FSSMSPFAPD AASVASSIKY HAEFTPLFSP EKFELPKAFF 120 ATAQSVRDAL IMNWNATYEY YNRVNVKQAY YLSMEFLQGR ALSNAVGNLG LNSAYGVALK 180 RLGFDLESVA SQEPDPALGN GGLGRLASCF LDSMATLNYP AWGYGLRYKY GLFKQRITKD 240 GQEEAAEDWL ELSNPWEIVR NDVSYPIKFY GKVVFGSDGK KLWIGGEDIV SVAYDVPIPG 300 YKTKTTINLR LWSTKAPSED FDLSSYNSGK HTEAAEALFN AEKICYVLYP GDESLEGKTL 360 RLKQQYTLCS ASLQDIVTRF ETRSGGNVNW EEFPEKVAVQ MNDTHPTLCI PELMRILMDL 420 KGLSWEDAWK ITQRTVAYTN HTVLPEALEK WSLELMEKLL PRHVEIIEKI DEELVRTIVS 480 EYGTADPNLL EEKLKAMRIL ENVELPSAFA DVIVKPEKKP VAAKDTIDQL EDAKTVVKKE 540 QEEENVGEEE EVIPEPTIKP PEMVRMANLA VVGGHAVNGV AEIHSEIVKQ DVFNDFVQLW 600 PEKFQNKTNG VTPRRWIRFC NPYLSDIITK WIGTEDWVLH TEKLAELRKF ADNEDLQSEW 660 RAAKKKNKLK VVSLIKERTG YTVSPDAMFD IQIKRIHEYK RQLLNILGIV YRYKKMKEMS 720 ASEREKAYVP RVCIFGGKAF ATYVQAKRIV KFITDVASTI NHDPEIGDLL KVIFVPDYNV 780 SVAELLIPAS ELSQHISTAG MEASGTSNMK FSMNGCVLIG TLDGANVEIR EEVGEENFFL 840 FGAKADEIVN LRNERAEGKF VPDPTFEEVK KFVRSGVFGS NNYDELIGSL EGNEGFGRAD 900 YFLVGKDFPS YIECQEKVDE AYRDQKVSFI KLLCLTQYKT SSTFKFAIND LQRWTRMSIL 960 NTAGSFKFSS DRTIHEYAKD IWNIKQVELP * 1020 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0058 | GlgP | 0 | 89 | 985 | 902 | + Glucan phosphorylase [Carbohydrate transport and metabolism] | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 563 | 984 | 430 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 95 | 502 | 412 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 98 | 502 | 408 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
TIGR02093 | P_ylase | 0 | 563 | 984 | 427 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ11757.1 | 0 | 58 | 990 | 6 | 935 | alpha-1,4 glucan phosphorylase [Gossypium hirsutum] |
RefSeq | NP_189578.1 | 0 | 1 | 990 | 1 | 962 | glucan phosphorylase, putative [Arabidopsis thaliana] |
Swiss-Prot | P53536 | 0 | 50 | 989 | 47 | 1002 | PHSL_VICFA RecName: Full=Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L; Flags: Precursor |
RefSeq | XP_002279075.1 | 0 | 28 | 990 | 43 | 958 | PREDICTED: similar to Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic [Vitis vinifera] |
RefSeq | XP_002305367.1 | 0 | 48 | 990 | 4 | 949 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2gj4_A | 0 | 101 | 985 | 23 | 817 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el5_A | 0 | 101 | 985 | 23 | 817 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el0_A | 0 | 101 | 985 | 23 | 817 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4eky_A | 0 | 101 | 985 | 23 | 817 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4eke_A | 0 | 101 | 985 | 23 | 817 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778303 | 890 | 118 | 991 | 0 |
HO797178 | 410 | 582 | 991 | 0 |
HO418036 | 584 | 304 | 884 | 0 |
HO613954 | 537 | 455 | 991 | 0 |
HO778303 | 121 | 3 | 120 | 0.00000000000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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