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Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10016978m |
Family | AA5 |
Protein Properties | Length: 539 Molecular Weight: 59229.5 Isoelectric Point: 5.2984 |
Chromosome | Chromosome/Scaffold: 5 Start: 10142865 End: 10144791 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 25 | 536 | 0 |
DLPGTWQLIVQDAGIASMHTAVTRFNTVILLDRTNIGPSRKALDRHRCRRDPNDAALKHDCYAHSVLFDLATNQIRPLMIQTDTWCSSGQFLSDGSLLQT GGDKDGFRKIRRFEPCDPNETCDWVELQDTELITGRWYATNQILPDGSVIIVGGRGTNTVEYYPPRENGAVPFQFLADVEDKQMDNLYPYVHLLPDDGGN LFVFANSRAVKYDHRINAVVKEYPPLDGGPRNYPSGGSSAMLAIQGDFATAEILICGGAQPGAFTARATDAPAHGTCGRIVATAADPVWVTEEMPFGRIM GDMVNLPTGEILIINGAQAGSQGFEMGSDPCLYPLLYRPDQPIGLRFMTLNPGTVPRMYHSTANLLPDGRVLVAGSNPHYFYKFNAEFPTELRIEAFSPE YLSPDRANLRPEIQEIPQIVRYGEVFDVFVTVALPVVEIIQINWGNAPFATHSYSQGQRLVKLTVAPSVPDGVSRYRIQCTAPPNGAVAPPGYYMAFAVN QGVPSMARWIRI |
Full Sequence |
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Protein Sequence Length: 539 Download |
MAELVPYYTP GIVLLVLLFS IARADLPGTW QLIVQDAGIA SMHTAVTRFN TVILLDRTNI 60 GPSRKALDRH RCRRDPNDAA LKHDCYAHSV LFDLATNQIR PLMIQTDTWC SSGQFLSDGS 120 LLQTGGDKDG FRKIRRFEPC DPNETCDWVE LQDTELITGR WYATNQILPD GSVIIVGGRG 180 TNTVEYYPPR ENGAVPFQFL ADVEDKQMDN LYPYVHLLPD DGGNLFVFAN SRAVKYDHRI 240 NAVVKEYPPL DGGPRNYPSG GSSAMLAIQG DFATAEILIC GGAQPGAFTA RATDAPAHGT 300 CGRIVATAAD PVWVTEEMPF GRIMGDMVNL PTGEILIING AQAGSQGFEM GSDPCLYPLL 360 YRPDQPIGLR FMTLNPGTVP RMYHSTANLL PDGRVLVAGS NPHYFYKFNA EFPTELRIEA 420 FSPEYLSPDR ANLRPEIQEI PQIVRYGEVF DVFVTVALPV VEIIQINWGN APFATHSYSQ 480 GQRLVKLTVA PSVPDGVSRY RIQCTAPPNG AVAPPGYYMA FAVNQGVPSM ARWIRIVS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 6.0e-29 | 434 | 536 | 104 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 3.0e-33 | 431 | 536 | 107 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 3.0e-136 | 42 | 282 | 246 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA42922.1 | 0 | 21 | 537 | 8 | 522 | glyoxal oxidase [Vitis pseudoreticulata] |
GenBank | ACV49899.1 | 0 | 21 | 537 | 8 | 522 | glyoxal oxidase [Vitis vinifera] |
RefSeq | NP_190963.1 | 0 | 1 | 538 | 1 | 545 | glyoxal oxidase-related [Arabidopsis thaliana] |
RefSeq | XP_002274763.1 | 0 | 21 | 537 | 27 | 541 | PREDICTED: similar to glyoxal oxidase [Vitis vinifera] |
RefSeq | XP_002322929.1 | 0 | 12 | 538 | 5 | 528 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eid_A | 6e-19 | 103 | 537 | 221 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
PDB | 2eib_A | 5e-18 | 103 | 537 | 221 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 1t2x_A | 5e-18 | 103 | 537 | 221 | 638 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
PDB | 2vz3_A | 6e-18 | 103 | 537 | 221 | 638 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |
PDB | 2vz1_A | 6e-18 | 103 | 537 | 221 | 638 | A Chain A, Glactose Oxidase C383s Mutant Identified By Directed Evolution |