| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10017065m |
| Family | PL1 |
| Protein Properties | Length: 502 Molecular Weight: 53914.1 Isoelectric Point: 6.7821 |
| Chromosome | Chromosome/Scaffold: 5 Start: 10516700 End: 10520677 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 147 | 336 | 0 |
| IVFSSNMLIRLKQELIISSYKTLDGRGSAVHITGNGCLTLQYVQHIIIHNLHIYDCKPSAGFEKRGRSDGDGISIFGSQKIWVDHCSMSHCTDGLIDAVM GSTAITISNNYFAHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 502 Download |
| MLLPNFASTI FMLCLFFTLL AATKPLNLTL PHQHPYPDSV ALHVIRSVNA SLARRQLGSS 60 SSSSSSSSSS SSCRTGNPID DCWKCSDSDW SSNRQRLADC SIGFGHGTLG GKNGKIYVVT 120 DSSDNNPTNP TPGTLRYGAI QEEPLWIVFS SNMLIRLKQE LIISSYKTLD GRGSAVHITG 180 NGCLTLQYVQ HIIIHNLHIY DCKPSAGFEK RGRSDGDGIS IFGSQKIWVD HCSMSHCTDG 240 LIDAVMGSTA ITISNNYFAH HDEVMLLGHD DNYAPDTGMQ VTIAFNHFGQ GLVQRMPRCR 300 RGYIHVVNND FTEWKMYAIG GSGNPTINSQ GNRYAAPSDP SAKEVTKRVD SKDDGEWANW 360 NWRSEGDLME NGAFFVASGE GVSSMYSKAS SVDPKAASLV NTLTRNAGVF GGPRDDQGQS 420 GNSYSPYGGG DGGSSGSGGL GDMSGMGGTT RGSSSSSNSN GDDFFGMIFG SNAQQPRSRL 480 TLLFSLLMIS FLSLSSTLLL W* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-27 | 107 | 409 | 322 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-63 | 158 | 334 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-78 | 152 | 338 | 198 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ87025.1 | 0 | 1 | 500 | 1 | 500 | pectate lyase-like protein [Brassica napus] |
| EMBL | CAB41092.1 | 0 | 1 | 499 | 1 | 505 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191052.2 | 0 | 1 | 489 | 1 | 491 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 20 | 471 | 20 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 1 | 414 | 1 | 415 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 77 | 409 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 77 | 409 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-20 | 97 | 334 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000005 | 161 | 311 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3krg_A | 0.0000000000001 | 163 | 311 | 125 | 295 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
