Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017105m |
Family | GH28 |
Protein Properties | Length: 489 Molecular Weight: 54474.9 Isoelectric Point: 8.7195 |
Chromosome | Chromosome/Scaffold: 5 Start: 5131313 End: 5134857 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 449 | 0 |
SKKGGGQLNVPPGRWLTAPFNLTSYMTLFLHQDAEILALQDEKYWPLLPPLPSYGYGREHPGPRYGSFIHGQNLRDVVVTGNNGSINGQGQTWWKKYRQK LLNHTRGPLVQIMWSSDVVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDSCEDMLIENSYISVGDDGIAIKSGWDQYGTTYGRPS KNILIRNLTIRSMVSAGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIVIKTDYNEHPDGGFNPQAFPVLENIN YTGIYGQGVRVPVRIQGSKEIPVKNVTFRDMSVGITYKKKHIFQCAYVEG |
Full Sequence |
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Protein Sequence Length: 489 Download |
MVDPLPRRFL SSHKSLVTVF WIATFASLFI WQFGGVSTNL YNVGTGFSFF RWSSTAAAAG 60 GFPKLRPVSF NLTDFGAVGD GVTVNTEAFE KAIYKISKFS KKGGGQLNVP PGRWLTAPFN 120 LTSYMTLFLH QDAEILALQD EKYWPLLPPL PSYGYGREHP GPRYGSFIHG QNLRDVVVTG 180 NNGSINGQGQ TWWKKYRQKL LNHTRGPLVQ IMWSSDVVFA NITLRDSPFW TLHPYDCKNV 240 TITNMTILAP VFEAPNTDGI DPDSCEDMLI ENSYISVGDD GIAIKSGWDQ YGTTYGRPSK 300 NILIRNLTIR SMVSAGISIG SEMSGGVSNI TVENILIWSS RRGVRIKTAP GRGGYVRDIT 360 FRNVTLDELR VGIVIKTDYN EHPDGGFNPQ AFPVLENINY TGIYGQGVRV PVRIQGSKEI 420 PVKNVTFRDM SVGITYKKKH IFQCAYVEGR VIGTIFPAPC ENLDRYDEQE RLVKQSDSQN 480 ATDIDYEI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-27 | 67 | 432 | 383 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-29 | 63 | 460 | 417 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-30 | 69 | 432 | 374 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-37 | 167 | 447 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-60 | 70 | 389 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN28906.1 | 0 | 5 | 488 | 1 | 484 | At3g42950/F18P9_110 [Arabidopsis thaliana] |
RefSeq | NP_189881.1 | 0 | 5 | 488 | 1 | 484 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002277239.1 | 0 | 9 | 487 | 26 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 9 | 487 | 27 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 9 | 487 | 25 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 63 | 429 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 63 | 429 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 63 | 429 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 63 | 429 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-17 | 114 | 390 | 52 | 324 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 435 | 9 | 443 | 0 |
FY451427 | 275 | 203 | 477 | 0 |
FE707848 | 301 | 71 | 371 | 0 |
FN769574 | 320 | 144 | 463 | 0 |
JK989090 | 297 | 193 | 489 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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