| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10017111m |
| Family | PL1 |
| Protein Properties | Length: 488 Molecular Weight: 54222 Isoelectric Point: 6.3387 |
| Chromosome | Chromosome/Scaffold: 5 Start: 9857151 End: 9860538 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 145 | 343 | 0 |
| IVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRSKSDGDGISIFGSKDIWIDHCSLSRC KDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 488 Download |
| MMLPRSCIVL FFSFFLFFLP QMGFAMLNNR TVLLTPHPDP ELVAYQVQWR VNASITRRQT 60 LDTTDQAGSN PCFTGNPIDD CWKCDPNWPN NRQSLADCGI GFGQYALGGK GGQFYFVTDS 120 SDDDAVDPKP GTLRYGVIQE EPLWIVFPSN MMIKLKQELI FNSYKTLDGR GANVHIVGGG 180 CITLQYVSNI IIHNIHIHHC YQSGNTNVRS SPTHYGFRSK SDGDGISIFG SKDIWIDHCS 240 LSRCKDGLID AVMGSTGITI SNNFFSHHNE VMLLGHSDHY EPDSGMQVTI AFNHFGEKLI 300 QRMPRCRRGY IHVVNNDFTQ WEMYAIGGSG NPTINSQGNR YTAPTNPFAK EVTKRVETPD 360 GDWKGWNWRS EGDILVNGAF FVASGEGAEM RYEKAYSVEP KSASFITQIT YHSGVLGVGG 420 RNNNLGMWTT TGSEGTSGLD SYNDYTDEMS GTGSTNRLSF SVLVLSFLLS SISYFVMFTS 480 TTQMVML* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-20 | 108 | 356 | 261 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-61 | 156 | 341 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-70 | 150 | 344 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 2 | 487 | 1 | 482 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 22 | 487 | 1 | 463 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 1 | 487 | 1 | 483 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 2 | 433 | 115 | 540 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 23 | 487 | 20 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 76 | 416 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 76 | 416 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-20 | 94 | 341 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.00000000000009 | 154 | 414 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.00000000000009 | 154 | 414 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
