Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017147m |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 51784.8 Isoelectric Point: 6.5041 |
Chromosome | Chromosome/Scaffold: 5 Start: 12985599 End: 12987726 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 424 | 0 |
SSDGGAQLFVPAGKWLTGSFNLTSHFTLFLHKDAILLAAQDLNEYPILKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTIDGQGSFWWQKFHGG KLKYTRPYLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDEYGISFGMPTK HLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEEITAYQTESGVRIKTAVGRGAFVKNVYVKGMSLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINY RDIVAENVSMAGRLEGISGDPFTGICISNATISMAAKHKKAIWMCSDVEG |
Full Sequence |
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Protein Sequence Length: 476 Download |
MKNILACIVT IIALSNLVTS SRGRRASQSF ETFEYTAITC RSHSTSITEF GGVGDGKTLN 60 TKAFQSAVDH LSQYSSDGGA QLFVPAGKWL TGSFNLTSHF TLFLHKDAIL LAAQDLNEYP 120 ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR 180 PYLIELMFSD TIQISNLTFL DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT 240 NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG 300 IEDVRAEEIT AYQTESGVRI KTAVGRGAFV KNVYVKGMSL HTMKWVFWMT GNYKAHADSH 360 YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC ISNATISMAA KHKKAIWMCS 420 DVEGVTSGVD PKPCDLLDGQ ESEKKKRMSD GGCDFPTDVL EIDNVELKTC NYQMS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-19 | 46 | 340 | 312 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-23 | 39 | 406 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-24 | 143 | 422 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-26 | 42 | 344 | 312 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 4.0e-50 | 46 | 347 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 1 | 472 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | NP_191708.1 | 0 | 1 | 475 | 1 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002277736.1 | 0 | 25 | 472 | 31 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 25 | 472 | 33 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 25 | 475 | 23 | 468 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.99967e-42 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.99967e-42 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.99967e-42 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.99967e-42 | 43 | 409 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 6e-17 | 39 | 384 | 151 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |