Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017170m |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 52044.9 Isoelectric Point: 6.4354 |
Chromosome | Chromosome/Scaffold: 5 Start: 13263264 End: 13265985 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 422 | 0 |
SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDKGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSIWWDWFRNG ELNYTRPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPDSSTNVCIEDCYIVTGDDLVSIKSGWDEYGISYARPSS KIKINRLTGQTTSSSGIAIGSEMSGGVSDVYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEHPDDKFDPKALPTIEKITF ENVNGGGIGVAGLLEGIEGDEFKNICFLNVTLIVKKNSKKSPWQCSNVRG |
Full Sequence |
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Protein Sequence Length: 472 Download |
MKRSFLLLYV LLVQAFYGAW CNVGGSLHCE YSNLENLHRP HSVSITEFGA VGDGVTLNTK 60 AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDKGATILG STSSENWPVV 120 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGSIWWDWFR NGELNYTRPH 180 LVELMNSTGL IISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV 240 CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS 300 DVYIKDLHLF NSNTGIRIKT SPGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDDKFD 360 PKALPTIEKI TFENVNGGGI GVAGLLEGIE GDEFKNICFL NVTLIVKKNS KKSPWQCSNV 420 RGYSQWVSPE ITCDSLKESI FPEHQADCFG LSENNMEISS GLNRSPWLLS W* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-28 | 6 | 345 | 359 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-29 | 36 | 345 | 318 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-33 | 41 | 445 | 421 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 9.0e-37 | 141 | 345 | 211 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-63 | 43 | 342 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB71871.1 | 0 | 1 | 471 | 1 | 470 | putative protein [Arabidopsis thaliana] |
EMBL | CBI37055.1 | 0 | 23 | 471 | 24 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_567126.1 | 0 | 1 | 471 | 1 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002301554.1 | 0 | 1 | 449 | 1 | 444 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 22 | 471 | 33 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.94273e-44 | 41 | 397 | 26 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.94273e-44 | 41 | 397 | 26 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.94273e-44 | 41 | 397 | 26 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.94273e-44 | 41 | 397 | 26 | 403 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-24 | 87 | 420 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |