y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017225m |
Family | CBM43 |
Protein Properties | Length: 455 Molecular Weight: 48858.9 Isoelectric Point: 9.9207 |
Chromosome | Chromosome/Scaffold: 5 Start: 10767071 End: 10769443 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 370 | 453 | 5.7e-34 |
WCVARSGASDKQLQDNINWVCGQGGVDCKPIQAGGSCFNPSSVRTHASFVMNAYFQSHGRSDGSCNFSGTGMVVGNNPSNGACK | |||
GH17 | 33 | 345 | 0 |
IGVNYGTLGNLPPPTQVANFIKTQTSIDSVKIFDVNPDILRAFAGTGISVVVTVPNVDIPALANGVQARRWVSANILPFHPQTKIKYISVGNEILLTGDN NMINNLLPAMRNLNNALVRAGVRDVKVTTAHSLNIIAYDLTGAPSSGRFRAGWDKGILAPILAYHRRTKSPFMVNPYPYFGFDPKNVNFAIFRTPYKAVR DPFTRHVYTNMFDALMDSTYSAMKALGYGDVNIVVGETGWPSACDAPWCSPANAAWFNLNIIKRAQGQGTPLMPKRRFETYIFGLFNEEGKPGPTAERNW GLFRADFSPVYDV |
Full Sequence |
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Protein Sequence Length: 455 Download |
MAKAPPSRSL TSLILLLSTA AVFLSLPAVI SAIGVNYGTL GNLPPPTQVA NFIKTQTSID 60 SVKIFDVNPD ILRAFAGTGI SVVVTVPNVD IPALANGVQA RRWVSANILP FHPQTKIKYI 120 SVGNEILLTG DNNMINNLLP AMRNLNNALV RAGVRDVKVT TAHSLNIIAY DLTGAPSSGR 180 FRAGWDKGIL APILAYHRRT KSPFMVNPYP YFGFDPKNVN FAIFRTPYKA VRDPFTRHVY 240 TNMFDALMDS TYSAMKALGY GDVNIVVGET GWPSACDAPW CSPANAAWFN LNIIKRAQGQ 300 GTPLMPKRRF ETYIFGLFNE EGKPGPTAER NWGLFRADFS PVYDVGLLRN GQGGGGRPAL 360 PAPSTAGGKW CVARSGASDK QLQDNINWVC GQGGVDCKPI QAGGSCFNPS SVRTHASFVM 420 NAYFQSHGRS DGSCNFSGTG MVVGNNPSNG ACKF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-27 | 369 | 441 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-42 | 369 | 454 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-84 | 33 | 345 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK76666.1 | 0 | 36 | 454 | 32 | 449 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
GenBank | AAM66982.1 | 0 | 36 | 454 | 32 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191103.1 | 0 | 36 | 454 | 32 | 449 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
RefSeq | XP_002312098.1 | 0 | 32 | 454 | 29 | 453 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530863.1 | 0 | 13 | 454 | 10 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 33 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 33 | 335 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 33 | 335 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 33 | 335 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 33 | 335 | 2 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |