Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10017263m |
Family | GH28 |
Protein Properties | Length: 442 Molecular Weight: 48293.7 Isoelectric Point: 8.2059 |
Chromosome | Chromosome/Scaffold: 5 Start: 431421 End: 433867 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 73 | 406 | 0 |
KAACSSKAKTRILVPENYTSLVRPIDLSGPCKARLTLQISGTIIAPDDPDAWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWRRSCKHNHSNPCQGA PTALTFHKCKNMRLENINVIDSQQMHIAFTSCRRVTISGLKVIAPSRSPNTDGIHISVSRGIVIDNTTVSTGDDCVSIVKNSSQISISNFVCGPGHGISI GSLGKSKSWEEVKDIVVDTASISDTENGVRIKTWQGGSGLVSKIIFRNIEMNNVSNPIIIDQYYCDSRKPCANQTTAVTIENISFVGVRGTSASKQAIKI SCSDTSPCRNILLQDIDLEPLNGDGLTESFCWEA |
Full Sequence |
---|
Protein Sequence Length: 442 Download |
MSFVLNRFFL ILVFVYSLAL TANANSFESL LQLPRRQWRS TRPRSERVLH VGNFGAKGNG 60 FTDDTKAFEE AWKAACSSKA KTRILVPENY TSLVRPIDLS GPCKARLTLQ ISGTIIAPDD 120 PDAWEGLNRR KWLYFHGLSR LTVEGGGTVN GMGQEWWRRS CKHNHSNPCQ GAPTALTFHK 180 CKNMRLENIN VIDSQQMHIA FTSCRRVTIS GLKVIAPSRS PNTDGIHISV SRGIVIDNTT 240 VSTGDDCVSI VKNSSQISIS NFVCGPGHGI SIGSLGKSKS WEEVKDIVVD TASISDTENG 300 VRIKTWQGGS GLVSKIIFRN IEMNNVSNPI IIDQYYCDSR KPCANQTTAV TIENISFVGV 360 RGTSASKQAI KISCSDTSPC RNILLQDIDL EPLNGDGLTE SFCWEAYGSS SGQVYPPPCL 420 SDETNVLEQS VQSGNTSAAY L* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 8.0e-86 | 50 | 411 | 364 | + polygalacturonase |
PLN02188 | PLN02188 | 1.0e-91 | 1 | 419 | 421 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 7.0e-97 | 76 | 391 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 2.0e-104 | 44 | 391 | 350 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 0 | 10 | 440 | 431 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55489.1 | 0 | 21 | 441 | 25 | 459 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
GenBank | ABM67700.1 | 0 | 5 | 433 | 9 | 438 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 21 | 441 | 25 | 444 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 27 | 433 | 30 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 26 | 433 | 11 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 143 | 336 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 4e-22 | 139 | 378 | 69 | 320 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 1e-21 | 141 | 390 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-21 | 141 | 390 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-21 | 141 | 390 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |