y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017351m |
Family | PL1 |
Protein Properties | Length: 412 Molecular Weight: 45631.2 Isoelectric Point: 7.9413 |
Chromosome | Chromosome/Scaffold: 5 Start: 2316808 End: 2319662 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 132 | 330 | 0 |
IIFKRDMVIRLKKELIISSFKTIDGRGSSVHITNGPCLKIHYANNIIIHGINIHDCKPGPGGMIRDGPRHTGYWMPSDGDAVAIFGGKHVWIDHCSLSNC DDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA |
Full Sequence |
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Protein Sequence Length: 412 Download |
MSSYSNTAYA LLLLLSILNT VAFSSSSSVT HVQDPNLVVD EVNRSVFNAS RRSLSYLSCR 60 TGNPIDDCWR CDPNWETNRQ RLADCAIGFG KNAMGGRGGR FYVVTDPSND DPVNPRPGTL 120 RHAVTQEEPL WIIFKRDMVI RLKKELIISS FKTIDGRGSS VHITNGPCLK IHYANNIIIH 180 GINIHDCKPG PGGMIRDGPR HTGYWMPSDG DAVAIFGGKH VWIDHCSLSN CDDGLIDAIH 240 GSTAITISNN HMTHHDKVML LGHSDSYTQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV 300 VNNDYTHWEM YAIGGSASPT IYSQGNRFLA PNTRFNKEVT KHEDAPESQW RDWNWRSEGD 360 MLLNGAYFRE SGAEAPSTYA RASSLSARPS SLVGSITTTA GTLGCRRGRP C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-27 | 88 | 328 | 261 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-66 | 143 | 328 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-75 | 137 | 332 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 32 | 411 | 20 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | NP_189376.1 | 0 | 1 | 411 | 1 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | Q9LTZ0 | 0 | 37 | 411 | 35 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
RefSeq | XP_002300069.1 | 0 | 15 | 411 | 4 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 12 | 411 | 10 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 63 | 403 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-21 | 82 | 330 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 2e-16 | 141 | 402 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 2e-16 | 141 | 402 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |