y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017416m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41148.9 Isoelectric Point: 8.5358 |
Chromosome | Chromosome/Scaffold: 5 Start: 12391082 End: 12393210 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 376 | 0 |
WAKACASVKPVTILVPKGRFLLSSIVFDGAKCKRKSVTVRIQGTLVAPSDYRVIGSKDYWILFEHLDGISVYGGVLDAQGTSLWSCKKSGKNCPSGATSI GFQNSINVVISGLTSLNSQMFHVAINGCRNVKVEGVKVFADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTSGLWIENVACGPGHGISIGSLG KESVEAGVQNITVQTVTFTGTENGVRIKSWARPSNGFAKNIRFQHCLMTNVQNPIVIDQHYCPGNENCPNQVSGIKISDVTFMDIHGTSATEVGVKLDCS SKKPCTGIRIQDVKLTYQNKPAMADCSHA |
Full Sequence |
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Protein Sequence Length: 391 Download |
MSSSSLLIIL LFLLSISSSS SAQTYNILSY GAKPDGKTDS TKALTAAWAK ACASVKPVTI 60 LVPKGRFLLS SIVFDGAKCK RKSVTVRIQG TLVAPSDYRV IGSKDYWILF EHLDGISVYG 120 GVLDAQGTSL WSCKKSGKNC PSGATSIGFQ NSINVVISGL TSLNSQMFHV AINGCRNVKV 180 EGVKVFADGN SPNTDGIHVQ SSSTVSILNS KISTGDDCVS IGPGTSGLWI ENVACGPGHG 240 ISIGSLGKES VEAGVQNITV QTVTFTGTEN GVRIKSWARP SNGFAKNIRF QHCLMTNVQN 300 PIVIDQHYCP GNENCPNQVS GIKISDVTFM DIHGTSATEV GVKLDCSSKK PCTGIRIQDV 360 KLTYQNKPAM ADCSHAGGSE AGFQLPNTCL * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-79 | 24 | 386 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-83 | 30 | 390 | 368 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-86 | 54 | 369 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-99 | 24 | 389 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-133 | 25 | 390 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28534.1 | 0 | 4 | 390 | 2 | 384 | unknown [Arabidopsis thaliana] |
EMBL | CAB75804.1 | 0 | 22 | 390 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
RefSeq | NP_181915.1 | 0 | 4 | 390 | 2 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0 | 22 | 390 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002529090.1 | 0 | 3 | 390 | 7 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 118 | 363 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.000000000000005 | 111 | 373 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000005 | 111 | 373 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 0.000000000000008 | 13 | 379 | 9 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.00000000000003 | 46 | 339 | 12 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |