PlantCAZyme

Basic Information
Species	Capsella rubella
Cazyme ID	Carubv10017450m
Family	GH17
Protein Properties	Length: 376 Molecular Weight: 41870.7 Isoelectric Point: 10.0795
Chromosome	Chromosome/Scaffold: 5 Start: 13125091 End: 13126531
Description	Glycosyl hydrolase family 17 protein
View CDS

External Links
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH17	55	370	0
IGINYGRYGSNLPPAEAIPSLVTSLSIKHVKTFDLDPRITKSFANTGITLSLCIPNDKIPSLSTNLSEAESIIRNSILPYHKSTIITSISVGNEVSLLPQ FSTHLVSAMVNVHRALKRYRLHKKIKVSTTHSLAILSRRFPPSTAIFHKSIGESVLKPLIRFLQRTDSPLMVNVYPYLAYKQSFPSIPLEFALFQPMNSP KRRRYVDPYSGVAYTNLFDIMLDSVDSAVKSLGLPKIPVVVSEIGWPTSGEPGEVAASLENARVFNQRLIEHLRRRWNKVTVYIFALFDEDQKTGAAVEK HWGLLYGNGSRKYDVN

Full Sequence
Protein Sequence Length: 376 Download
MKMLMMTTMQ VHYVFLILLI FSISIASCSI VSSLEGPQIG INYGRYSSNL EGPVIGINYG 60 RYGSNLPPAE AIPSLVTSLS IKHVKTFDLD PRITKSFANT GITLSLCIPN DKIPSLSTNL 120 SEAESIIRNS ILPYHKSTII TSISVGNEVS LLPQFSTHLV SAMVNVHRAL KRYRLHKKIK 180 VSTTHSLAIL SRRFPPSTAI FHKSIGESVL KPLIRFLQRT DSPLMVNVYP YLAYKQSFPS 240 IPLEFALFQP MNSPKRRRYV DPYSGVAYTN LFDIMLDSVD SAVKSLGLPK IPVVVSEIGW 300 PTSGEPGEVA ASLENARVFN QRLIEHLRRR WNKVTVYIFA LFDEDQKTGA AVEKHWGLLY 360 GNGSRKYDVN ISPPI*

Full Sequence

Protein Sequence Length: 376 Download

MKMLMMTTMQ VHYVFLILLI FSISIASCSI VSSLEGPQIG INYGRYSSNL EGPVIGINYG    60
RYGSNLPPAE AIPSLVTSLS IKHVKTFDLD PRITKSFANT GITLSLCIPN DKIPSLSTNL    120
SEAESIIRNS ILPYHKSTII TSISVGNEVS LLPQFSTHLV SAMVNVHRAL KRYRLHKKIK    180
VSTTHSLAIL SRRFPPSTAI FHKSIGESVL KPLIRFLQRT DSPLMVNVYP YLAYKQSFPS    240
IPLEFALFQP MNSPKRRRYV DPYSGVAYTN LFDIMLDSVD SAVKSLGLPK IPVVVSEIGW    300
PTSGEPGEVA ASLENARVFN QRLIEHLRRR WNKVTVYIFA LFDEDQKTGA AVEKHWGLLY    360
GNGSRKYDVN ISPPI* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
COG5309	COG5309	6.0e-10	290	362	76	+ Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
pfam00332	Glyco_hydro_17	5.0e-89	55	370	321	+ Glycosyl hydrolases family 17.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	ABD91577.1	0	50	372	22	346	beta-1,3-glucanase [Medicago sativa]
GenBank	ABK28613.1	0	1	375	1	375	unknown [Arabidopsis thaliana]
RefSeq	NP_191740.1	0	1	375	1	375	glycosyl hydrolase family 17 protein [Arabidopsis thaliana]
RefSeq	XP_002456331.1	0	50	370	22	345	hypothetical protein SORBIDRAFT_03g034100 [Sorghum bicolor]
RefSeq	XP_002514201.1	0	50	372	21	345	Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1ghs_B	0	55	369	1	304	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	1ghs_A	0	55	369	1	304	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3f55_D	0	55	372	2	316	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3f55_C	0	55	372	2	316	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities
PDB	3f55_B	0	55	372	2	316	A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities

Transmembrane Domains

Start	End
12	34

Signal Peptide

Cleavage Site
26

EST Download unfiltered results here

Hit	Length	Start	End	EValue
BY808987	155	223	376	0
CX270921	154	196	349	0
DR383679	130	247	376	0
CX270921	31	343	373	0.00009
CX270921	20	177	196	1.7

Orthologous Group
Species	ID
Arabidopsis lyrata	324620
Arabidopsis thaliana	AT3G61810.1
Brassica rapa	Bra003475
Thellungiella halophila	Thhalv10006482m

CAZyme Information