Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10017664m |
Family | CE8 |
Protein Properties | Length: 318 Molecular Weight: 35419.9 Isoelectric Point: 7.1909 |
Chromosome | Chromosome/Scaffold: 5 Start: 3452639 End: 3455855 |
Description | pectin methylesterase 31 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 8 | 297 | 0 |
RVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYKQPVYVPKRKNFITFAGISPEITVLTWNNTATKIEHHQASRVIGTGTFGCGSVIVEGEDFIAE NITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHINCKSQGFITAQSRKSSQESTGYVFLRC VITGNGQNGYMYLGRPWGPFGRVIFAYSYIDSCVRNVGWHNWGNAENERSACFYEYRCFGPGSCSSGRVPWSRELMDDEAGHFVHHSFVD |
Full Sequence |
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Protein Sequence Length: 318 Download |
MATTRIVRVS QDGSGDYCSV QDAIDSVPLG NTCRTVIRLS PGIYKQPVYV PKRKNFITFA 60 GISPEITVLT WNNTATKIEH HQASRVIGTG TFGCGSVIVE GEDFIAENIT FENSAPEGSG 120 QAVAIRVTAD RCAFYNCRFL GWQDTLYLHH GKQYLKDCYI EGSVDFIFGN STALLEHCHI 180 NCKSQGFITA QSRKSSQEST GYVFLRCVIT GNGQNGYMYL GRPWGPFGRV IFAYSYIDSC 240 VRNVGWHNWG NAENERSACF YEYRCFGPGS CSSGRVPWSR ELMDDEAGHF VHHSFVDPDQ 300 DRPWLCLRMG VKIPFSA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 1.0e-86 | 7 | 299 | 308 | + Pectinesterase. | ||
PLN02432 | PLN02432 | 1.0e-95 | 1 | 305 | 307 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-96 | 2 | 291 | 298 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-106 | 4 | 305 | 310 | + pectinesterase family protein | ||
PLN02773 | PLN02773 | 0 | 1 | 317 | 317 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08265.1 | 0 | 6 | 317 | 5 | 316 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_566842.1 | 0 | 1 | 317 | 1 | 317 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002283941.1 | 0 | 5 | 317 | 4 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305315.1 | 0 | 4 | 317 | 3 | 316 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530008.1 | 0 | 5 | 317 | 4 | 316 | Pectinesterase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 7 | 278 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6.02558e-44 | 9 | 309 | 7 | 297 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 1e-23 | 6 | 292 | 8 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 1e-23 | 6 | 292 | 8 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-23 | 6 | 292 | 8 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG480743 | 273 | 1 | 273 | 0 |
DY292729 | 311 | 6 | 315 | 0 |
GR994392 | 302 | 4 | 305 | 0 |
DY292725 | 305 | 6 | 310 | 0 |
ES794113 | 289 | 3 | 291 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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