| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10017857m |
| Family | PL1 |
| Protein Properties | Length: 263 Molecular Weight: 29594.6 Isoelectric Point: 8.4714 |
| Chromosome | Chromosome/Scaffold: 5 Start: 10622083 End: 10623891 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 62 | 240 | 0 |
| VFAVSGTINLHSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRC YFAQHDKTMLIGADPSHVDDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 263 Download |
| MTTLPYADAD CSLRALAGRA EGFGRFAVGG LHGDVYVVTS LADDGPGTLR EGGRRKEPLW 60 IVFAVSGTIN LHSYLSVSSY KTIDGRGQRI KLTGKGIRLK ECEHIIICNL EFEGGRGHDV 120 DGIQIKPKSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPSHVD 180 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VFSQCNIYEA 240 GVKKKTFEYY HEKVDARFPL AS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 9.0e-39 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 8.0e-46 | 28 | 247 | 239 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-67 | 75 | 241 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK92527.1 | 0 | 16 | 257 | 1 | 242 | unknown [Populus trichocarpa] |
| EMBL | CAB75748.1 | 0 | 1 | 254 | 1 | 264 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 1 | 254 | 1 | 254 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 1 | 257 | 1 | 257 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 254 | 1 | 254 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.99993e-41 | 7 | 258 | 12 | 283 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.99993e-41 | 7 | 258 | 12 | 283 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-26 | 28 | 238 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-24 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 6e-23 | 82 | 239 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GR997119 | 253 | 1 | 253 | 0 |
| GT019596 | 254 | 1 | 254 | 0 |
| ES932894 | 232 | 1 | 232 | 0 |
| GT005576 | 243 | 1 | 243 | 0 |
| DK513696 | 230 | 1 | 230 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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