| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10017928m |
| Family | CBM43 |
| Protein Properties | Length: 245 Molecular Weight: 26019.8 Isoelectric Point: 10.4009 |
| Chromosome | Chromosome/Scaffold: 5 Start: 1061984 End: 1064985 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 99 | 177 | 1.9e-28 |
| CLCKDGVGEKDLQTSIDYACGVLKDCNPIHDKGPCYQPNTVKSHCDWAVNTYFQRSGQIPGSCNFSGTATTSSNPPSSN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 245 Download |
| MIDGSSSSSI RLRASGVMKP KKIISKRKIK LNVCKAKRRS NRDNRILQKK ETIIKTNVGL 60 AIIFESSFGP YFRKKTVMRL LLGLLFLLSL ATSSSATYCL CKDGVGEKDL QTSIDYACGV 120 LKDCNPIHDK GPCYQPNTVK SHCDWAVNTY FQRSGQIPGS CNFSGTATTS SNPPSSNNNH 180 SSSKKSAGTT PTIGTSSGTQ TFPGTPVFGP AGSFDPSGSN NGASGLFISN SIALILGFSV 240 IAFL* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-19 | 97 | 168 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-29 | 97 | 169 | 73 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79417.1 | 5.60519e-45 | 96 | 244 | 76 | 245 | AC068197_27 F16A14.5 [Arabidopsis thaliana] |
| GenBank | ACU14053.1 | 7e-36 | 78 | 189 | 1 | 114 | unknown [Glycine max] |
| GenBank | ACU19899.1 | 3e-38 | 78 | 193 | 1 | 118 | unknown [Glycine max] |
| RefSeq | NP_172838.2 | 4.06377e-44 | 96 | 244 | 19 | 185 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
| RefSeq | NP_671770.1 | 0 | 78 | 220 | 1 | 146 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.000000000000005 | 94 | 173 | 9 | 89 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX756879 | 168 | 77 | 244 | 0 |
| EX760597 | 148 | 97 | 244 | 0 |
| EV020802 | 184 | 64 | 245 | 0 |
| EV045476 | 187 | 64 | 245 | 0 |
| CN828776 | 181 | 67 | 245 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
