Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10018803m |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 51591.4 Isoelectric Point: 9.0651 |
Chromosome | Chromosome/Scaffold: 5 Start: 8172779 End: 8174643 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 426 | 0 |
ATDGGGAQLVVPPGKWLTGSFNLTSHFTLFIQQGATILASQDESEWPVIAPLPSYGKGRDGTGAGRFNSLISGSNLTDVVITGNNGTINGQGQYWWDKFK KKQFKLTRPYLIELLFSKNIQISNITLIDSPSWNIHPVYCKNVIIKSVTVLAPVTVPNTDGINPDSCANTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMP TKQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEEVTLTNTESAIRIKTAAGRGGYVKNIFARRITMKTMKYVFWMSGDYNQHPDEGYDPKAFPEVTNI NYRDMKAENVTMSGSLDGIDKDPFKGICISNVTIALADNAKKVQWNCTNVAG |
Full Sequence |
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Protein Sequence Length: 472 Download |
MIRPVFGILV FLAIFHFPAI ESQSQRNLVT SKIEFSALRC RKHSAILTDF GAVGDGKTSN 60 TKAFKKAISK LSQMATDGGG AQLVVPPGKW LTGSFNLTSH FTLFIQQGAT ILASQDESEW 120 PVIAPLPSYG KGRDGTGAGR FNSLISGSNL TDVVITGNNG TINGQGQYWW DKFKKKQFKL 180 TRPYLIELLF SKNIQISNIT LIDSPSWNIH PVYCKNVIIK SVTVLAPVTV PNTDGINPDS 240 CANTLIEDCY IVSGDDCIAV KSGWDQYGIK FGMPTKQLSI RRLTCISPKS AGVALGSEMS 300 GGIKDVRIEE VTLTNTESAI RIKTAAGRGG YVKNIFARRI TMKTMKYVFW MSGDYNQHPD 360 EGYDPKAFPE VTNINYRDMK AENVTMSGSL DGIDKDPFKG ICISNVTIAL ADNAKKVQWN 420 CTNVAGVTSR VKPEPCSLLP EKKAPMKNDE DCVFPSDLIP IESVVLKKCF V* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-21 | 49 | 436 | 413 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-25 | 77 | 424 | 356 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-27 | 25 | 423 | 417 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-27 | 47 | 433 | 413 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-55 | 47 | 343 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 1 | 469 | 1 | 464 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABE66001.1 | 0 | 1 | 471 | 1 | 416 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 469 | 12 | 475 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 469 | 12 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 1 | 471 | 1 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 47 | 411 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 47 | 411 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 47 | 411 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 47 | 411 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-19 | 90 | 382 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |