| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10018855m |
| Family | PL1 |
| Protein Properties | Length: 456 Molecular Weight: 51302.6 Isoelectric Point: 10.0935 |
| Chromosome | Chromosome/Scaffold: 5 Start: 646440 End: 648170 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 171 | 368 | 0 |
| IFARSMIIKLQQELIITNDKTIDGRGANVHITGGAGLTLQFVRNVIIHNIYIKQIKKGAGGLIRDSEHHFGLRTVSDGDGINIFGATNVWIDHVSMTDCS DGMIDAIMGSTAITISNSHFTDHDEVMLFGGTNKDVIDKKMQITVAFNHFGKRLKQRMPRVRYGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MVNLGSYVFV FVSLSLAVVV PSVQAHIAVH DEYWTQRQTE ALQQTLEAYD PEPLNVTDHF 60 NHQAALAMVP TGIVNETRRE LRQVGRGNKK PRRGRRYESL NAIDKCWRGD KNWDKNRKKL 120 ADCVLGFGRK TTGGKNGPFY VVTDPSDTDL MNPKPGTLRY AVTRDRPLWI IFARSMIIKL 180 QQELIITNDK TIDGRGANVH ITGGAGLTLQ FVRNVIIHNI YIKQIKKGAG GLIRDSEHHF 240 GLRTVSDGDG INIFGATNVW IDHVSMTDCS DGMIDAIMGS TAITISNSHF TDHDEVMLFG 300 GTNKDVIDKK MQITVAFNHF GKRLKQRMPR VRYGLVHVVN NDYTHWEMYA IGGNMNPTII 360 SQGNRFIAPP IEDSKQVTKR EYTPYPEWKT WNWQSEKDYF LNGAYFVQSG KANAWSTAPK 420 NPIPRKFAIR PQPGTKVRRL TKDAGTLGCK PGKSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 7.0e-19 | 26 | 81 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-29 | 131 | 366 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-66 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-78 | 176 | 370 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 455 | 5 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN79927.1 | 0 | 18 | 455 | 19 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 18 | 455 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172894.1 | 0 | 1 | 455 | 5 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 1 | 455 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 101 | 447 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-20 | 158 | 368 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 6e-18 | 179 | 445 | 71 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1jta_A | 1e-16 | 179 | 446 | 78 | 358 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
