Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10018919m |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 51341.7 Isoelectric Point: 9.4395 |
Chromosome | Chromosome/Scaffold: 5 Start: 1839172 End: 1842200 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 429 | 0 |
KAACKVAGGKVEVPGGKEFMVKAVTLQGPCMEETVIQIEGTLVAPEKIGSWPKSSLFQWLNFKWVSHVTIQGSGTLNGRGSNWWNLDTYQTQTRNKYIPP MKPTALRFYASDNVTVRDISIVNSPLCHLKFDDSDGVKINNVTISSPENSPNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHISCGPGHGI SIGGLGKDKSVACVSDIIVEDISIQNTLAGVRIKTWQGGIGVVKNLTFTNIQVTDVKVPIVIDQYYCDKSKCKNQTRAVSISGVKYNNIFGSFTTQPLHI ACSNNVPCMGVDLMDIRLRPSGGIRGLQTHQQQQALCWN |
Full Sequence |
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Protein Sequence Length: 474 Download |
MKTIKSSPLL AMLVGVIIVV AAISTISVEG RKHHIKKIKP KHRRHSKNIP SGSPAPAPYP 60 STHDGVFNIL SFGAKGDGLS DDSKALVGAW KAACKVAGGK VEVPGGKEFM VKAVTLQGPC 120 MEETVIQIEG TLVAPEKIGS WPKSSLFQWL NFKWVSHVTI QGSGTLNGRG SNWWNLDTYQ 180 TQTRNKYIPP MKPTALRFYA SDNVTVRDIS IVNSPLCHLK FDDSDGVKIN NVTISSPENS 240 PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HISCGPGHGI SIGGLGKDKS 300 VACVSDIIVE DISIQNTLAG VRIKTWQGGI GVVKNLTFTN IQVTDVKVPI VIDQYYCDKS 360 KCKNQTRAVS ISGVKYNNIF GSFTTQPLHI ACSNNVPCMG VDLMDIRLRP SGGIRGLQTH 420 QQQQALCWNS YGRTQGPLVP SSISYCLRKM SNNIGGYYSQ KDSRSYDKIC PSS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-67 | 67 | 413 | 354 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-69 | 100 | 408 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-69 | 67 | 413 | 353 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-75 | 72 | 440 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-91 | 66 | 441 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA66407.1 | 0 | 85 | 412 | 1 | 328 | polygalacturonase precursor homologue [Arabidopsis thaliana] |
RefSeq | NP_189293.1 | 0 | 29 | 472 | 29 | 470 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 473 | 29 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 1 | 471 | 1 | 467 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 470 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-28 | 160 | 359 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 6e-21 | 51 | 449 | 3 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 7e-18 | 101 | 394 | 26 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-18 | 101 | 394 | 26 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-18 | 101 | 394 | 26 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |