Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10019065m |
Family | GH28 |
Protein Properties | Length: 434 Molecular Weight: 46670.4 Isoelectric Point: 8.259 |
Chromosome | Chromosome/Scaffold: 5 Start: 11566321 End: 11568736 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 94 | 421 | 0 |
KKACSTKGVTNFLVPKGKSYLLTSTQFRGPCKSLRNFQILGTLSASTKRSDYKDKYHWLIIEDVNNLSIDGGSTGIINGNGKIWWQNSCKIDKSKPCTTA PTALTLYKLNNLNVKNLRVRDAQQIQVSIENCNNVDVKNVAITAPGDSPNTDGIHITSTKNIRVSKSDIGTGDDCISIEDGTQNLQISDLTCGPGHGISI GSLGDDNSKAYVSGIYVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIQMKNVKNPIIIDQNYCDKAKCEEQDSAVQVKNVVYKNISGTSATNVAITLN CSEKYPCQGIVLENVNIKGGKASCKNAN |
Full Sequence |
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Protein Sequence Length: 434 Download |
MGRCYRGVLT LFFTVLLMLS LCQAFSSNVV DDGYGHEDGS FESDSLLKLN NDDVLTLKSS 60 GETTSESSTV SVSNFGAKGD GKTDDTQAFE KAWKKACSTK GVTNFLVPKG KSYLLTSTQF 120 RGPCKSLRNF QILGTLSAST KRSDYKDKYH WLIIEDVNNL SIDGGSTGII NGNGKIWWQN 180 SCKIDKSKPC TTAPTALTLY KLNNLNVKNL RVRDAQQIQV SIENCNNVDV KNVAITAPGD 240 SPNTDGIHIT STKNIRVSKS DIGTGDDCIS IEDGTQNLQI SDLTCGPGHG ISIGSLGDDN 300 SKAYVSGIYV DGAKFSESDN GVRIKTYQGG SGTAKNIKFQ NIQMKNVKNP IIIDQNYCDK 360 AKCEEQDSAV QVKNVVYKNI SGTSATNVAI TLNCSEKYPC QGIVLENVNI KGGKASCKNA 420 NVKNQGTVSP KCS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-83 | 75 | 411 | 342 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-97 | 74 | 431 | 368 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-105 | 97 | 423 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-117 | 74 | 430 | 365 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 1 | 433 | 434 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA65072.1 | 0 | 1 | 432 | 1 | 432 | polygalacturonase [Brassica napus] |
EMBL | CAA90272.1 | 0 | 1 | 432 | 1 | 432 | Polygalacturonase [Brassica napus] |
EMBL | CAC05657.1 | 0 | 1 | 432 | 1 | 431 | endopolygalacturonase [Brassica napus] |
EMBL | CAD21651.2 | 0 | 1 | 432 | 1 | 432 | endo polygalacturonase [Brassica rapa subsp. rapa] |
RefSeq | NP_191310.1 | 0 | 1 | 433 | 1 | 431 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 6e-25 | 83 | 422 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-25 | 83 | 422 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-25 | 83 | 422 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 6e-25 | 83 | 422 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 6e-25 | 83 | 422 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |