| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10019167m |
| Family | GH5 |
| Protein Properties | Length: 512 Molecular Weight: 56776.7 Isoelectric Point: 6.7451 |
| Chromosome | Chromosome/Scaffold: 5 Start: 1631707 End: 1633932 |
| Description | Cellulase (glycosyl hydrolase family 5) protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 12 | 324 | 1.4013e-44 |
| IIDENGQRVKLACVNWPSHLQPVVAEGLSKQRVDDVAKKIVEMGFNCVRLTWPLDLATNETLANNVTVRQSFQSLGLIDDISGFQTKNPSMIDLPLMEAY KTVVAKLGNKNVMVILDNHVTKPGWCCGYDDGNGFFGDTYFDPATWIAGLTKIATTFKGTSNVVGMSLRNELRGARQNVDDWFKYMQQGAEAVHKANPNA LVILSGLSYDVDLSFVRSRPVNLTFTGKLVFELHRYSFTNTNTWSSKNPNEACGEILKSIEDGGGFNLRDFPVFLSEFGIDLRGKNVNDNRYIGCILGWA AENDVDWSIWTLQ | |||
| Full Sequence |
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| Protein Sequence Length: 512 Download |
| MAFPLSTKSR WIIDENGQRV KLACVNWPSH LQPVVAEGLS KQRVDDVAKK IVEMGFNCVR 60 LTWPLDLATN ETLANNVTVR QSFQSLGLID DISGFQTKNP SMIDLPLMEA YKTVVAKLGN 120 KNVMVILDNH VTKPGWCCGY DDGNGFFGDT YFDPATWIAG LTKIATTFKG TSNVVGMSLR 180 NELRGARQNV DDWFKYMQQG AEAVHKANPN ALVILSGLSY DVDLSFVRSR PVNLTFTGKL 240 VFELHRYSFT NTNTWSSKNP NEACGEILKS IEDGGGFNLR DFPVFLSEFG IDLRGKNVND 300 NRYIGCILGW AAENDVDWSI WTLQGSYYLR EGVVGMSEYY GVLDSDWDRV RNMSFLQRLS 360 LIQSPLQSLP GPGSQPKVYN LVFHPLTGLC MLQSILDPTK VTLGLCNESQ PWSYTPDNTL 420 TLKDKSLCLE NTGPNAPVKL SKTSCSSPNL SKWHTISASN MLLAAKSTNN SLCLDVDESN 480 NLIASNCKCV KGEDSSCDPM SQWFKIIKVS K* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 0.0004 | 386 | 487 | 113 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 4.0e-7 | 379 | 487 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| smart00458 | RICIN | 5.0e-8 | 383 | 487 | 111 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
| pfam00150 | Cellulase | 1.0e-13 | 45 | 323 | 287 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 1 | 511 | 1 | 507 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 1 | 511 | 31 | 537 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189245.1 | 0 | 1 | 511 | 1 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285424.1 | 0 | 1 | 510 | 25 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002515055.1 | 0 | 2 | 511 | 31 | 535 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 2e-17 | 7 | 294 | 8 | 288 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 2e-17 | 7 | 294 | 8 | 288 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 5e-17 | 7 | 294 | 8 | 288 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 5e-17 | 7 | 294 | 8 | 288 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 4dm1_C | 0.000002 | 20 | 248 | 28 | 267 | A Chain A, Contribution Of Disulfide Bond Toward Thermostability In Hyperthermostable Endocellulase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY282456 | 271 | 1 | 271 | 0 |
| DK465433 | 284 | 112 | 394 | 0 |
| FC879052 | 259 | 1 | 259 | 0 |
| CB290890 | 266 | 15 | 280 | 0 |
| DY905374 | 288 | 37 | 323 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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