| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10019396m |
| Family | GH2 |
| Protein Properties | Length: 1108 Molecular Weight: 125350 Isoelectric Point: 5.3812 |
| Chromosome | Chromosome/Scaffold: 5 Start: 10335713 End: 10344011 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 87 | 973 | 0 |
| VKSLSGYWKFFLAPKPANVPENFYDAAFPDSDWDALPVPSNWQCHGFDRPIYTNVVYPFPNDPPHVPEDNPTGCYRTYFQIPKEWKDRRILLHFEAVDSA FFAWINGNPIGYSQDSRLPAEFEISEYCYPWDSGKQNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPKVFIADYFFKSKLADDFSYADIQVEVK IDNMQESSKDLVLSNFIIEAAVFSTKNWYNSEGFSSELSPKVANLTLNPSPSPVLGFHGYLLEGKLDSPNLWSAEQPNVYILVLTLKDTSGKILDSESSI VGIRQVSKAFKQLLVNGHPVVIKGVNRHEHHPRVGKTNIESCMVKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLSGHLKHP AKEPSWAAAMLDRVVGMVERDKNHTCIVSWSLGNEAGYGPNHSAMAGWIREKDPSRLVHYEGGGSRTSSTDIICPMYMRVWDIVKIALDQNESRPLILCE YQHAMGNSNGNIDEYWEAIDNTFGLQGGFIWDWVDQGLLKPGSDGIKRWAYGGDFGDQPNDLNFCLNGLIWPDRTPHPALHEVKYCYQPINVSLTDGTMK VANTYFFHTTEELEFSWTVHGDGLELGSGALSIPVIKPQNSFDMEWKSGPWFSFWNDSNAGELFLTITAKLLSPTRSLETGHLVSSTQIPLPAKRQIIPQ ALKKTDTIIACETVGDFIKISQQDSWELMINVRKGAIEGWKIQGVLLMNEAILPCFWRAPTDNDKGGGDSSYFSRWKAAQLDDVEFLVESCSVKSITDKS VEIEFIYLGSSASGSSKSEALFKVNVTYLIYGSGDIITNWIVEPNSDLPPLPRVGIEFHIEKTLDRVKWYGKGPYECYPDRKSAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1108 Download |
| MVSLATRMIL PSENGYRAWE DQTLFKWRKR DPHVTLRCHE SVEGSLRYWY QRNNVDLAVS 60 KTAVWNDDAV QAALDSAAFW VDGLPFVKSL SGYWKFFLAP KPANVPENFY DAAFPDSDWD 120 ALPVPSNWQC HGFDRPIYTN VVYPFPNDPP HVPEDNPTGC YRTYFQIPKE WKDRRILLHF 180 EAVDSAFFAW INGNPIGYSQ DSRLPAEFEI SEYCYPWDSG KQNVLAVQVF RWSDGSYLED 240 QDHWWLSGIH RDVLLLAKPK VFIADYFFKS KLADDFSYAD IQVEVKIDNM QESSKDLVLS 300 NFIIEAAVFS TKNWYNSEGF SSELSPKVAN LTLNPSPSPV LGFHGYLLEG KLDSPNLWSA 360 EQPNVYILVL TLKDTSGKIL DSESSIVGIR QVSKAFKQLL VNGHPVVIKG VNRHEHHPRV 420 GKTNIESCMV KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS 480 GHLKHPAKEP SWAAAMLDRV VGMVERDKNH TCIVSWSLGN EAGYGPNHSA MAGWIREKDP 540 SRLVHYEGGG SRTSSTDIIC PMYMRVWDIV KIALDQNESR PLILCEYQHA MGNSNGNIDE 600 YWEAIDNTFG LQGGFIWDWV DQGLLKPGSD GIKRWAYGGD FGDQPNDLNF CLNGLIWPDR 660 TPHPALHEVK YCYQPINVSL TDGTMKVANT YFFHTTEELE FSWTVHGDGL ELGSGALSIP 720 VIKPQNSFDM EWKSGPWFSF WNDSNAGELF LTITAKLLSP TRSLETGHLV SSTQIPLPAK 780 RQIIPQALKK TDTIIACETV GDFIKISQQD SWELMINVRK GAIEGWKIQG VLLMNEAILP 840 CFWRAPTDND KGGGDSSYFS RWKAAQLDDV EFLVESCSVK SITDKSVEIE FIYLGSSASG 900 SSKSEALFKV NVTYLIYGSG DIITNWIVEP NSDLPPLPRV GIEFHIEKTL DRVKWYGKGP 960 YECYPDRKSA AHVAIYEHNV GDMHVPYIVP GESGGRTDVR WVTFQNKDGL GIYVSTYGSS 1020 SPMQMNASYY TTGELHRATH EEDLIKGKNI EVHLDHKHMG LGGDDSWTPC VHDKYLIPPQ 1080 PYSFSLRLCP ITAGTSVLDI YKDQLPC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 5.0e-96 | 810 | 1088 | 280 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 7.0e-111 | 397 | 677 | 291 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 4.0e-146 | 87 | 971 | 894 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 17 | 1090 | 1109 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 88 | 1094 | 1011 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB77564.1 | 0 | 1 | 1107 | 1 | 1075 | beta Galactosidase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001030858.1 | 0 | 1 | 1107 | 1 | 1108 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | NP_680128.1 | 0 | 1 | 1107 | 1 | 1107 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002303929.1 | 0 | 1 | 1105 | 1 | 1111 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1104 | 1 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 87 | 1089 | 49 | 1019 | A Chain A, Peanut Peroxidase |
| PDB | 1f4h_C | 0 | 87 | 1089 | 49 | 1019 | A Chain A, Peanut Peroxidase |
| PDB | 1f4h_B | 0 | 87 | 1089 | 49 | 1019 | A Chain A, Peanut Peroxidase |
| PDB | 1f4h_A | 0 | 87 | 1089 | 49 | 1019 | A Chain A, Peanut Peroxidase |
| PDB | 1f4a_D | 0 | 87 | 1089 | 49 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO804274 | 385 | 129 | 510 | 0 |
| DK499562 | 275 | 244 | 518 | 0 |
| DK497367 | 260 | 1 | 260 | 0 |
| DK502071 | 256 | 1 | 256 | 0 |
| HO804274 | 47 | 504 | 549 | 0.00000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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