| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10019418m |
| Family | CE8 |
| Protein Properties | Length: 589 Molecular Weight: 62848.6 Isoelectric Point: 8.8059 |
| Chromosome | Chromosome/Scaffold: 5 Start: 13277395 End: 13279260 |
| Description | VANGUARD 1 homolog 2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 278 | 571 | 0 |
| VVAKDGSGQFKTITEAVNACPDKNPGRCIIHIKAGIYTEQVRIPKKKNNIFMFGDGATKTIITFNKSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTA GPLGHQAVALRVNGDRAVVFNCRFDAYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAVKIGIVLHNCRI IPDKELEADRLTVKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGANPSMRPPWVKVAKSAAEVEGYTVANWV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 589 Download |
| MAAGKVVAAV ASILLVVGVA IGVMTYVNKS GGSNGGSNAP ISSHQKAVQT ICQSTTDQGS 60 CAKTLEPVKS DDPSKLVKAF LMATKEAITK SSNFTASTEG GMGTNINATS KAVLDYCKRV 120 LTYALEDLET IVEEMGEDLQ QSGSKLDQLK QWLTGVFNYQ TDCLDDIEEV ELKKIMGEGI 180 SNSKVLTSNA IDIFHSVVTA MSQMGVKLDD MKNVTIGAGA GAPARRLLED TDEKGLPQWF 240 SGNDRKLMAK AGRGAPAAGD DGIGEGGGGG GKIKATHVVA KDGSGQFKTI TEAVNACPDK 300 NPGRCIIHIK AGIYTEQVRI PKKKNNIFMF GDGATKTIIT FNKSVKLSPG TTTSLSGTVQ 360 VESEGFMAKW IGFKNTAGPL GHQAVALRVN GDRAVVFNCR FDAYQDTLYV NNGRQFYRNI 420 VVSGTVDFIF GKSATVIQNS LILVRKGSPG QSNYVTADGN EKGAAVKIGI VLHNCRIIPD 480 KELEADRLTV KSYLGRPWKK FATTVIIGTE IGDLIKPEGW TEWQGEQNHK TAKYIEFNNR 540 GPGANPSMRP PWVKVAKSAA EVEGYTVANW VGPANWIQEA NVPVQLGL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02990 | PLN02990 | 4.0e-102 | 41 | 583 | 550 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 5.0e-109 | 40 | 588 | 553 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-132 | 278 | 572 | 301 | + Pectinesterase. | ||
| PLN02745 | PLN02745 | 5.0e-137 | 40 | 588 | 564 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02197 | PLN02197 | 0 | 39 | 588 | 565 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAV91510.1 | 0 | 29 | 588 | 29 | 588 | VGD1-like protein 2 [Arabidopsis thaliana] |
| GenBank | ABC25451.1 | 0 | 41 | 588 | 39 | 585 | pollen development related protein [Brassica rapa subsp. chinensis] |
| RefSeq | NP_191776.1 | 0 | 29 | 588 | 29 | 588 | VGDH2 (Vanguard 1 homolog 2); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | P41510 | 0 | 41 | 588 | 39 | 584 | PME_BRANA RecName: Full=Probable pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase; Flags: Precursor |
| Swiss-Prot | Q42608 | 0 | 14 | 588 | 1 | 571 | PME_BRACM RecName: Full=Pectinesterase/pectinesterase inhibitor; Includes: RecName: Full=Pectinesterase inhibitor; AltName: Full=Pectin methylesterase inhibitor; Includes: RecName: Full=Pectinesterase; Short=PE; AltName: Full=Pectin methylesterase |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 278 | 588 | 10 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 273 | 588 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-21 | 278 | 571 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-21 | 278 | 571 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-21 | 278 | 571 | 7 | 338 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
