CAZyme Information

Basic Information
SpeciesCapsella rubella
Cazyme IDCarubv10019437m
FamilyGH43
Protein PropertiesLength: 467 Molecular Weight: 53262.6 Isoelectric Point: 7.7379
ChromosomeChromosome/Scaffold: 5 Start: 8584901 End: 8586395
Descriptionglycosyl hydrolase family protein 43
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431583835.4e-32
  SKVYYWYGEYKDGPTYLSHKKGAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHTSNVLERPKVIYNSDTGKYVMWMHIDDANYTKASVGVAI
  SDNPTGPFNYLYSKSPHGFDSRDMTVFKDDDNIAYLIYSSEDNSVLHIGPLTKNYLDVEPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALA
  HAAESIMGPWETLGNPCVGGNSIFRS
Full Sequence
Protein Sequence     Length: 467     Download
MRTMKNKYNK RAASLRCSPF TLVSAVVGCV FMIHLTMLYS RRYSVDLEVS PQLLIHHPIV    60
RELERVEEEN IHMPPPRKRS PRAIKRKPKR PTTLVEEFLD ENSQIRHLFF PDMKSAYGPT    120
KGEVNDTSHY YFPGRIWTDT EGNPIQAHGG GILYDDISKV YYWYGEYKDG PTYLSHKKGA    180
ARVDIIGVGC YSSKDLWTWK NEGVVLAAEE TDETHDLHTS NVLERPKVIY NSDTGKYVMW    240
MHIDDANYTK ASVGVAISDN PTGPFNYLYS KSPHGFDSRD MTVFKDDDNI AYLIYSSEDN    300
SVLHIGPLTK NYLDVEPVMK RIMVGQHREA PAIFKHQNTY YMITSGCTGW APNEALAHAA    360
ESIMGPWETL GNPCVGGNSI FRSTTFFAQS TFVIPLPGVP GVFIFMADRW NPADLRDSRY    420
LWLPLIIGGP ADHPLEYNFG FPMWSRVSVY WHRQWRLPSA KEKKIA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08999GH43_ABN_26.0e-16190382223+
cd09004GH43_bXyl2.0e-19189372195+
cd08990GH43_AXH_like6.0e-20190368193+
cd08978GH_F4.0e-49161427278+
cd08985GH43_63.0e-130145425282+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI33680.105646425434unnamed protein product [Vitis vinifera]
RefSeqNP_190557.1014661466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_201555.205545863466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_975008.105545868471glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqXP_002525277.10446034494beta-glucanase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F013442545328A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
PDB3vt2_E013442545328A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
PDB3vt2_D013442545328A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
PDB3vt2_C013442545328A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
PDB3vt2_B013442545328A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Transmembrane Domains
StartEnd
1335
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8561533271314570
GO3743623301334580
EG493060257392950
EY7037302951424360
GO8017532961654600
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980Bra036036
Capsella rubellaCarubv10027885m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny