Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10019506m |
Family | GH3 |
Protein Properties | Length: 616 Molecular Weight: 67216.3 Isoelectric Point: 4.8518 |
Chromosome | Chromosome/Scaffold: 5 Start: 7447830 End: 7450676 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 87 | 322 | 0 |
LASRLGIPIIYGIDAVHGNNNVYGATIFPHNIGLGATRDADLVRRIGAATALEVRACGAHWAFAPCVAALRDPRWGRSYESYSEDTDIICELSSLVSGLQ GEPPKEHPNGYPFLAGRNNVVACAKHFVGDGGTEGGVNEGNTIVSYEELEKVHLAPYLNCLAQGVSTVMASYSSWNGSKLHSNYFLLTELLKQKLGFKGF IISDWEALERLSEPFGSNYRNCVKISVNAGVDMVMV |
Full Sequence |
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Protein Sequence Length: 616 Download |
MEGSNETCVY KNPDAPVEAR VKDLLSRMTL PEKIGQMTQI ERIVTTHPVI TDYFIGSVLN 60 GGGSWPFEDA KTSDWADMID GYQNAALASR LGIPIIYGID AVHGNNNVYG ATIFPHNIGL 120 GATRDADLVR RIGAATALEV RACGAHWAFA PCVAALRDPR WGRSYESYSE DTDIICELSS 180 LVSGLQGEPP KEHPNGYPFL AGRNNVVACA KHFVGDGGTE GGVNEGNTIV SYEELEKVHL 240 APYLNCLAQG VSTVMASYSS WNGSKLHSNY FLLTELLKQK LGFKGFIISD WEALERLSEP 300 FGSNYRNCVK ISVNAGVDMV MVPFKYEQFI KDLTDLVESG EVTMSRIDDA VERILRVKFV 360 AGLFEHPLTD RSLLSTVGCK EHRELARESV RKSLVLLKNG KSSEKPFLPL DRNAKKILVT 420 GTHADDLGYQ CGGWTKAWFG LSGRITIGTT LLDAIKEVVG EKTEVIYEKT PSEETLASSQ 480 GFSYAIVAVG ETPYAETLGD NLELTIPLNG NDIVTAVAEK IPTLVVLFSG RPVVLEQPVL 540 EKTEALVAAW LPGTEGQGMS DVIFGDFDFE GKLPLSWLRH VDQLPLTADH PNSYDPLFPL 600 GFGLNYKSGE NSKPV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 3.0e-44 | 12 | 577 | 613 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 7.0e-51 | 394 | 606 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 2.0e-84 | 29 | 357 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-86 | 28 | 459 | 447 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 2.0e-91 | 12 | 608 | 677 | + beta-D-glucoside glucohydrolase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY25449.1 | 0 | 28 | 609 | 1 | 581 | At3g47010 [Arabidopsis thaliana] |
RefSeq | NP_190284.1 | 0 | 7 | 607 | 7 | 606 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | NP_190285.3 | 0 | 2 | 609 | 3 | 609 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_190288.1 | 0 | 1 | 611 | 1 | 635 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | NP_190289.1 | 0 | 1 | 615 | 1 | 612 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1x39_A | 0 | 9 | 604 | 4 | 597 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1x38_A | 0 | 9 | 604 | 4 | 597 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
PDB | 1lq2_A | 0 | 9 | 604 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1j8v_A | 0 | 9 | 604 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
PDB | 1iex_A | 0 | 9 | 604 | 4 | 597 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY265467 | 368 | 136 | 499 | 0 |
EX134175 | 297 | 313 | 609 | 0 |
EX132989 | 299 | 56 | 354 | 0 |
ES901611 | 273 | 285 | 557 | 0 |
HO784016 | 426 | 56 | 480 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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