| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10019737m |
| Family | CBM22 |
| Protein Properties | Length: 942 Molecular Weight: 105082 Isoelectric Point: 6.5103 |
| Chromosome | Chromosome/Scaffold: 2 Start: 2705881 End: 2709538 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 223 | 358 | 2.8e-32 |
| IVVNPNFEDGLNNWSGRSCKIVLHDSIADGKIVPESGKAFASATERTQYWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTNATVQVTLWVQNPNQRDQY IGIANAQATDKEWIHLKGKFLLNGSASRVVIYIEGP | |||
| CBM22 | 53 | 192 | 2e-32 |
| NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKFGTYVVVTNRKETWQGLEQDITSRVKPCCLYKVSATVSVSGHVQGLVEVMATLKLENEQS PTNYQLIAKTCVFKEKWVRLEGMFSLPSLPERVVFYLEGP | |||
| CBM22 | 393 | 535 | 7.90332e-43 |
| NIVTNSHLSDGTTNGWFPLGNCTLSVAEGSPRILPPMARDSLGPHEPLSGRHILVTNRTQTWMGPAQVITDKIKLFLTYQISVWVKVGSGITSPQNVNVA LGIDSQWVNGGQAEINDDRWHEIGGSFRIEKQPSKALLYVQGP | |||
| GH10 | 593 | 868 | 0 |
| QIRNSFPVGTCISRTNIDNEDFVEFFLKNFNWAVFGNELKWYWTEPEKGKLNYQDADDMLNLCSSNNIETRGHCIFWEVQSNVQQWIQNMNQTDINTAVQ NRLTSLLNRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRVEMFKTAHQLDPSATLFVNDYHIEDGCDPKSCPEKYTEHILDLQEKGAPVGGIGIQGHIDSP VGPIVCSALDKLGILGLPIWFTELDVSSVNEHIRADDLEVMMWEAYGHPAVEGIMLWGFWELFMSRDNSHLVNAEG | |||
| Full Sequence |
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| Protein Sequence Length: 942 Download |
| MKRFTVCCFS NGIHKNRTRN PDKRLRESME ISRKDNEENN NNVASNIGSD HTNVIVNHDF 60 SSGMHSWHPN CCEAFVVTAE SNVSHGVLDP SKFGTYVVVT NRKETWQGLE QDITSRVKPC 120 CLYKVSATVS VSGHVQGLVE VMATLKLENE QSPTNYQLIA KTCVFKEKWV RLEGMFSLPS 180 LPERVVFYLE GPSPGIDLLV QSVTIHSESE PALERVTAED ETIVVNPNFE DGLNNWSGRS 240 CKIVLHDSIA DGKIVPESGK AFASATERTQ YWNGIQQEIT GKVQRKRVYE ATAVVRIYGN 300 NVTNATVQVT LWVQNPNQRD QYIGIANAQA TDKEWIHLKG KFLLNGSASR VVIYIEGPPP 360 GTDILLNSLT VKHAEKVPPS PPPSIENPAF GVNIVTNSHL SDGTTNGWFP LGNCTLSVAE 420 GSPRILPPMA RDSLGPHEPL SGRHILVTNR TQTWMGPAQV ITDKIKLFLT YQISVWVKVG 480 SGITSPQNVN VALGIDSQWV NGGQAEINDD RWHEIGGSFR IEKQPSKALL YVQGPSSGVD 540 LMVAGLQIFP VDRLARIKHL KRQCDKIRKS DVTLKFSGVD STKLSGAMVR VRQIRNSFPV 600 GTCISRTNID NEDFVEFFLK NFNWAVFGNE LKWYWTEPEK GKLNYQDADD MLNLCSSNNI 660 ETRGHCIFWE VQSNVQQWIQ NMNQTDINTA VQNRLTSLLN RYKGKFKHYD VNNEMLHGSF 720 YQDKLGKDIR VEMFKTAHQL DPSATLFVND YHIEDGCDPK SCPEKYTEHI LDLQEKGAPV 780 GGIGIQGHID SPVGPIVCSA LDKLGILGLP IWFTELDVSS VNEHIRADDL EVMMWEAYGH 840 PAVEGIMLWG FWELFMSRDN SHLVNAEGDV NEAGKRFLAV KKDWLSHANG HIDQNGAFPF 900 RGYSGNYVVE VITTSSAKVL KTFVVEKGDS SQVITVDLQG L* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-17 | 53 | 194 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-17 | 392 | 537 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-31 | 590 | 851 | 284 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 7.0e-81 | 631 | 877 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-81 | 594 | 881 | 308 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 0 | 29 | 941 | 1 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 29 | 941 | 1 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 42 | 938 | 153 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 53 | 555 | 2 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 221 | 548 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 6e-28 | 584 | 851 | 23 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 6e-28 | 584 | 851 | 23 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 4e-27 | 621 | 819 | 39 | 241 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 4e-27 | 621 | 819 | 39 | 241 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 6e-27 | 621 | 819 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 421 | 718 | 0 |
| EL428755 | 280 | 598 | 877 | 0 |
| EX570690 | 295 | 644 | 938 | 0 |
| EB442796 | 130 | 94 | 219 | 0.0000002 |
| EB442796 | 116 | 256 | 371 | 0.000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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