Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10019845m |
Family | GH3 |
Protein Properties | Length: 769 Molecular Weight: 83985 Isoelectric Point: 8.4803 |
Chromosome | Chromosome/Scaffold: 2 Start: 13023446 End: 13026797 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 73 | 327 | 0 |
IPRLGVPAYEWWSEALHGVANVGPGIRFNGTVRAATSFPQVILTAASFDSYEWFRIAQVIGKEARGVYNAGQANGMTFWAPNINIFRDPRWGRGQETPGE DPMMTGSYAVAYVRGLQGDSFDGRKVLSGAHLQASACCKHFTAYDLDRWKGITRYVFNAQVSLADLAETYQPPFKKCVEEGRASGIMCAYNRVNGIPSCA DPNLLTHTARGLWRFRGYITSDCDAVSIIYDAQGYAKSPEDAVAGVLKAGMDVNC |
Full Sequence |
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Protein Sequence Length: 769 Download |
MSKLVHLLLL LLFIFQAVDS APPPHACDPS NPTTKLYQFC RTDLRIRNRA HDLVSRLTID 60 EKISQLVNTA PGIPRLGVPA YEWWSEALHG VANVGPGIRF NGTVRAATSF PQVILTAASF 120 DSYEWFRIAQ VIGKEARGVY NAGQANGMTF WAPNINIFRD PRWGRGQETP GEDPMMTGSY 180 AVAYVRGLQG DSFDGRKVLS GAHLQASACC KHFTAYDLDR WKGITRYVFN AQVSLADLAE 240 TYQPPFKKCV EEGRASGIMC AYNRVNGIPS CADPNLLTHT ARGLWRFRGY ITSDCDAVSI 300 IYDAQGYAKS PEDAVAGVLK AGMDVNCGSY LQKHTKSALQ QKKVSESDID RALLNLFSVR 360 IRLGLFNGDP TKLPYGNISP KDVCSPAHEA LALDAARNGI VLLKNNLKLL PLSKSSSSLA 420 VIGPNANAAR TLLGNYAGPP CKTVTPLDAL RGYVKNAVYH QGCDAVVCSN ADINQAVAIA 480 RNADHVVLIM GLDQTQEKED LDRVSLTLPG KQQDLITSAA NAAKKPVVLV LICGGPVDVS 540 FATNNDKIGS IIWAGYPGEA GGIALAEIIF GDHNPGGRLP VTWYPQSFVN VKMTDMRMRS 600 ATGYPGRTYK FYKGPKVFEF GHGLSYSKYS YRFKNLPETK LYLNQSKALL NSDSVRYALV 660 SEMEKEACNV AKTKVTVTVE NQGEMAGKHP VLMFARHERG GEDGKRAEKQ LVGFKSIVLS 720 NGEKTEIEFE IGLCEHLSRA NEVGVMVVEE GKYFLTVGDS ELPFTLYV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 3.0e-46 | 70 | 427 | 366 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-54 | 420 | 627 | 218 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 4.0e-55 | 58 | 352 | 324 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 5.0e-76 | 52 | 760 | 788 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 20 | 761 | 757 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_177929.1 | 0 | 13 | 768 | 12 | 767 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002302284.1 | 0 | 5 | 766 | 16 | 740 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002302285.1 | 0 | 18 | 768 | 21 | 773 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306583.1 | 0 | 10 | 768 | 13 | 745 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513892.1 | 0 | 1 | 768 | 6 | 774 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 44 | 758 | 1 | 722 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3u48_A | 0 | 44 | 758 | 1 | 722 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3u4a_B | 0 | 44 | 758 | 1 | 722 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3u4a_A | 0 | 44 | 758 | 1 | 722 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 4i3g_B | 2e-36 | 43 | 451 | 47 | 427 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |