y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10019942m |
Family | CBM43 |
Protein Properties | Length: 642 Molecular Weight: 68835.7 Isoelectric Point: 6.3681 |
Chromosome | Chromosome/Scaffold: 2 Start: 7828696 End: 7831750 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 504 | 585 | 5.3e-31 |
CTAREGADPKMVQAALDWACGPGKIDCSPIKQGEACYEPDNVIAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTC | |||
GH17 | 166 | 485 | 0 |
IGVNIGTDLSDMPHPTQVVALLKAQQIRHIRLYDADPGMLVALANSAIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATTIIAISVGSDVLTSLS NAAPVLVSAIKNVHAALLSANLDRLIKVSTPLSTALILDPFPPSQAFFNRSLNAVIVPLLSFLQSTNSYLMMNVYPYYDYMESNGVIPLDYALFKPIPPN KEAVDANTLVRYSNAFDAMIDATYFAMAFLNFTNIPVLVTESGWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNEDTKAG SLSEKNWGLFNANGDPAYIL |
Full Sequence |
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Protein Sequence Length: 642 Download |
TLSLSLSLSL SLSLSLSLSL SLSLSLSLSL SLSLSLSLSL SFDIINKTFS LSCPLSPQKA 60 LTLFFSTSSS HAISPLIPFF VGLYLFLTKL TFLDSKPILF CHLPLFLVSL GYLRFSPKKS 120 LSLSFSLSMA SSLHLHLLLS LSLLVLASAA PSPSPSPSPS DEGAYIGVNI GTDLSDMPHP 180 TQVVALLKAQ QIRHIRLYDA DPGMLVALAN SAIKVIISIP NDQLLGIGQS NSTAANWVKR 240 NVIAHYPATT IIAISVGSDV LTSLSNAAPV LVSAIKNVHA ALLSANLDRL IKVSTPLSTA 300 LILDPFPPSQ AFFNRSLNAV IVPLLSFLQS TNSYLMMNVY PYYDYMESNG VIPLDYALFK 360 PIPPNKEAVD ANTLVRYSNA FDAMIDATYF AMAFLNFTNI PVLVTESGWP SKGETNEPDA 420 TLDNANTYNS NLIRHVLNKT GTPKRPGIAV STYIYELYNE DTKAGSLSEK NWGLFNANGD 480 PAYILRLTNS GSVLANDTTN QTYCTAREGA DPKMVQAALD WACGPGKIDC SPIKQGEACY 540 EPDNVIAHAN YAFDTYYHQT GNNPDACNFN GVASITTTDP SHGTCVFVGS GVNGRNGTSV 600 NITAPSANST TSSGIQNELY YSRGLWSIFT VIILNVANVF L* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-10 | 195 | 478 | 297 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-18 | 502 | 574 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-39 | 502 | 587 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-88 | 166 | 483 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG51762.1 | 0 | 177 | 581 | 1 | 404 | AC066691_2 beta-1,3-glucanase precursor, putative; 34016-35272 [Arabidopsis thaliana] |
GenBank | ABI93926.1 | 0 | 145 | 640 | 16 | 505 | At1g66250 [Arabidopsis thaliana] |
EMBL | CBI33479.1 | 0 | 160 | 613 | 16 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_176799.2 | 0 | 145 | 640 | 16 | 505 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002531922.1 | 0 | 162 | 612 | 30 | 479 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 166 | 483 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 166 | 488 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 166 | 488 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 166 | 488 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 166 | 488 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |